Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00203

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00202 and CCNA_00203 are separated by 57 nucleotidesCCNA_00203 and CCNA_00204 are separated by 3 nucleotides CCNA_00202: CCNA_00202 - DesA-family fatty acid desaturase, at 216,215 to 217,270 _00202 CCNA_00203: CCNA_00203 - sterol desaturase family protein, at 217,328 to 218,332 _00203 CCNA_00204: CCNA_00204 - glutathione-regulated potassium-efflux system protein kefB, at 218,336 to 220,237 _00204 Position (kb) 217 218 219Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 216.329 kb on + strand, within CCNA_00202at 216.337 kb on - strand, within CCNA_00202at 216.337 kb on - strand, within CCNA_00202at 216.362 kb on - strand, within CCNA_00202at 216.372 kb on - strand, within CCNA_00202at 216.423 kb on + strand, within CCNA_00202at 216.486 kb on + strand, within CCNA_00202at 216.530 kb on + strand, within CCNA_00202at 216.532 kb on + strand, within CCNA_00202at 216.539 kb on + strand, within CCNA_00202at 216.551 kb on + strand, within CCNA_00202at 216.559 kb on + strand, within CCNA_00202at 216.584 kb on - strand, within CCNA_00202at 216.603 kb on - strand, within CCNA_00202at 216.607 kb on + strand, within CCNA_00202at 216.615 kb on + strand, within CCNA_00202at 216.621 kb on - strand, within CCNA_00202at 216.663 kb on - strand, within CCNA_00202at 216.677 kb on - strand, within CCNA_00202at 216.785 kb on + strand, within CCNA_00202at 216.785 kb on + strand, within CCNA_00202at 216.785 kb on + strand, within CCNA_00202at 216.785 kb on + strand, within CCNA_00202at 216.785 kb on + strand, within CCNA_00202at 216.785 kb on + strand, within CCNA_00202at 216.785 kb on + strand, within CCNA_00202at 216.793 kb on - strand, within CCNA_00202at 216.793 kb on - strand, within CCNA_00202at 216.805 kb on + strand, within CCNA_00202at 216.812 kb on - strand, within CCNA_00202at 216.840 kb on + strand, within CCNA_00202at 216.848 kb on - strand, within CCNA_00202at 216.848 kb on - strand, within CCNA_00202at 216.893 kb on + strand, within CCNA_00202at 216.901 kb on - strand, within CCNA_00202at 216.912 kb on + strand, within CCNA_00202at 216.956 kb on - strand, within CCNA_00202at 216.956 kb on - strand, within CCNA_00202at 216.964 kb on - strand, within CCNA_00202at 216.987 kb on - strand, within CCNA_00202at 217.064 kb on + strand, within CCNA_00202at 217.074 kb on + strand, within CCNA_00202at 217.074 kb on + strand, within CCNA_00202at 217.082 kb on + strand, within CCNA_00202at 217.120 kb on + strand, within CCNA_00202at 217.129 kb on - strand, within CCNA_00202at 217.166 kb on + strandat 217.202 kb on + strandat 217.214 kb on + strandat 217.216 kb on + strandat 217.255 kb on - strandat 217.260 kb on - strandat 217.260 kb on - strandat 217.354 kb on - strandat 217.354 kb on - strandat 217.354 kb on - strandat 217.354 kb on - strandat 217.396 kb on - strandat 217.398 kb on - strandat 217.419 kb on - strandat 217.420 kb on - strandat 217.429 kb on + strand, within CCNA_00203at 217.446 kb on - strand, within CCNA_00203at 217.446 kb on - strand, within CCNA_00203at 217.472 kb on + strand, within CCNA_00203at 217.480 kb on - strand, within CCNA_00203at 217.480 kb on - strand, within CCNA_00203at 217.480 kb on - strand, within CCNA_00203at 217.480 kb on - strand, within CCNA_00203at 217.480 kb on - strand, within CCNA_00203at 217.503 kb on + strand, within CCNA_00203at 217.544 kb on + strand, within CCNA_00203at 217.552 kb on - strand, within CCNA_00203at 217.564 kb on - strand, within CCNA_00203at 217.564 kb on - strand, within CCNA_00203at 217.566 kb on + strand, within CCNA_00203at 217.566 kb on + strand, within CCNA_00203at 217.571 kb on + strand, within CCNA_00203at 217.584 kb on - strand, within CCNA_00203at 217.602 kb on - strand, within CCNA_00203at 217.610 kb on + strand, within CCNA_00203at 217.610 kb on + strand, within CCNA_00203at 217.620 kb on + strand, within CCNA_00203at 217.632 kb on + strand, within CCNA_00203at 217.638 kb on - strand, within CCNA_00203at 217.656 kb on - strand, within CCNA_00203at 217.668 kb on - strand, within CCNA_00203at 217.676 kb on - strand, within CCNA_00203at 217.715 kb on - strand, within CCNA_00203at 217.768 kb on + strand, within CCNA_00203at 217.798 kb on + strand, within CCNA_00203at 217.798 kb on + strand, within CCNA_00203at 217.798 kb on + strand, within CCNA_00203at 217.834 kb on - strand, within CCNA_00203at 217.834 kb on - strand, within CCNA_00203at 217.834 kb on - strand, within CCNA_00203at 217.834 kb on - strand, within CCNA_00203at 217.834 kb on - strand, within CCNA_00203at 217.838 kb on + strand, within CCNA_00203at 217.878 kb on - strand, within CCNA_00203at 217.886 kb on + strand, within CCNA_00203at 217.937 kb on + strand, within CCNA_00203at 217.937 kb on + strand, within CCNA_00203at 217.937 kb on + strand, within CCNA_00203at 217.945 kb on - strand, within CCNA_00203at 217.950 kb on - strand, within CCNA_00203at 217.962 kb on + strand, within CCNA_00203at 217.968 kb on - strand, within CCNA_00203at 217.995 kb on + strand, within CCNA_00203at 218.018 kb on + strand, within CCNA_00203at 218.018 kb on + strand, within CCNA_00203at 218.019 kb on + strand, within CCNA_00203at 218.027 kb on - strand, within CCNA_00203at 218.044 kb on + strand, within CCNA_00203at 218.080 kb on + strand, within CCNA_00203at 218.085 kb on + strand, within CCNA_00203at 218.088 kb on - strand, within CCNA_00203at 218.140 kb on + strand, within CCNA_00203at 218.146 kb on - strand, within CCNA_00203at 218.173 kb on + strand, within CCNA_00203at 218.237 kb on + strandat 218.267 kb on - strandat 218.272 kb on - strandat 218.282 kb on + strandat 218.284 kb on + strandat 218.284 kb on + strandat 218.284 kb on + strandat 218.284 kb on + strandat 218.292 kb on - strandat 218.302 kb on + strandat 218.302 kb on + strandat 218.302 kb on + strandat 218.310 kb on - strandat 218.310 kb on - strandat 218.335 kb on - strandat 218.347 kb on - strandat 218.371 kb on + strandat 218.371 kb on + strandat 218.371 kb on + strandat 218.388 kb on + strandat 218.459 kb on + strandat 218.459 kb on + strandat 218.461 kb on - strandat 218.477 kb on - strandat 218.493 kb on - strandat 218.573 kb on + strand, within CCNA_00204at 218.595 kb on + strand, within CCNA_00204at 218.620 kb on + strand, within CCNA_00204at 218.628 kb on - strand, within CCNA_00204at 218.656 kb on + strand, within CCNA_00204at 218.667 kb on + strand, within CCNA_00204at 218.675 kb on - strand, within CCNA_00204at 218.677 kb on + strand, within CCNA_00204at 218.685 kb on - strand, within CCNA_00204at 218.685 kb on - strand, within CCNA_00204at 218.685 kb on - strandat 218.685 kb on - strand, within CCNA_00204at 218.685 kb on - strand, within CCNA_00204at 218.685 kb on - strand, within CCNA_00204at 218.696 kb on + strand, within CCNA_00204at 218.742 kb on - strand, within CCNA_00204at 218.745 kb on + strand, within CCNA_00204at 218.753 kb on - strand, within CCNA_00204at 218.755 kb on + strand, within CCNA_00204at 218.758 kb on + strand, within CCNA_00204at 218.831 kb on + strand, within CCNA_00204at 218.831 kb on + strand, within CCNA_00204at 218.883 kb on + strand, within CCNA_00204at 218.891 kb on - strand, within CCNA_00204at 218.901 kb on - strand, within CCNA_00204at 218.906 kb on + strand, within CCNA_00204at 218.906 kb on + strand, within CCNA_00204at 218.911 kb on + strand, within CCNA_00204at 218.914 kb on - strand, within CCNA_00204at 218.914 kb on - strand, within CCNA_00204at 218.914 kb on - strand, within CCNA_00204at 218.914 kb on - strand, within CCNA_00204at 218.921 kb on - strand, within CCNA_00204at 219.012 kb on - strand, within CCNA_00204at 219.055 kb on + strand, within CCNA_00204at 219.058 kb on - strand, within CCNA_00204at 219.100 kb on - strand, within CCNA_00204at 219.120 kb on + strand, within CCNA_00204at 219.140 kb on - strand, within CCNA_00204at 219.149 kb on + strand, within CCNA_00204at 219.157 kb on - strand, within CCNA_00204at 219.176 kb on - strand, within CCNA_00204at 219.188 kb on + strand, within CCNA_00204at 219.196 kb on - strand, within CCNA_00204at 219.209 kb on - strand, within CCNA_00204at 219.211 kb on + strand, within CCNA_00204at 219.224 kb on + strand, within CCNA_00204at 219.239 kb on + strand, within CCNA_00204at 219.254 kb on - strand, within CCNA_00204at 219.284 kb on + strand, within CCNA_00204at 219.284 kb on - strand, within CCNA_00204at 219.292 kb on + strand, within CCNA_00204at 219.300 kb on + strand, within CCNA_00204at 219.312 kb on - strand, within CCNA_00204at 219.312 kb on - strand, within CCNA_00204at 219.312 kb on - strand, within CCNA_00204at 219.320 kb on + strand, within CCNA_00204at 219.320 kb on + strand, within CCNA_00204at 219.320 kb on + strand, within CCNA_00204at 219.327 kb on - strand, within CCNA_00204at 219.328 kb on - strand, within CCNA_00204at 219.328 kb on - strand, within CCNA_00204at 219.328 kb on - strand, within CCNA_00204at 219.328 kb on - strand, within CCNA_00204at 219.328 kb on - strand, within CCNA_00204

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
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216,329 + CCNA_00202 0.11 -1.0
216,337 - CCNA_00202 0.12 -0.2
216,337 - CCNA_00202 0.12 +0.8
216,362 - CCNA_00202 0.14 +2.6
216,372 - CCNA_00202 0.15 +0.4
216,423 + CCNA_00202 0.20 +0.6
216,486 + CCNA_00202 0.26 -2.5
216,530 + CCNA_00202 0.30 -0.4
216,532 + CCNA_00202 0.30 +3.5
216,539 + CCNA_00202 0.31 +2.4
216,551 + CCNA_00202 0.32 +0.5
216,559 + CCNA_00202 0.33 +0.4
216,584 - CCNA_00202 0.35 +1.3
216,603 - CCNA_00202 0.37 -0.6
216,607 + CCNA_00202 0.37 +2.4
216,615 + CCNA_00202 0.38 +1.4
216,621 - CCNA_00202 0.38 -0.5
216,663 - CCNA_00202 0.42 +0.0
216,677 - CCNA_00202 0.44 +0.4
216,785 + CCNA_00202 0.54 +1.4
216,785 + CCNA_00202 0.54 +1.7
216,785 + CCNA_00202 0.54 +2.3
216,785 + CCNA_00202 0.54 +1.8
216,785 + CCNA_00202 0.54 +3.2
216,785 + CCNA_00202 0.54 +2.1
216,785 + CCNA_00202 0.54 +2.4
216,793 - CCNA_00202 0.55 -0.5
216,793 - CCNA_00202 0.55 -1.3
216,805 + CCNA_00202 0.56 +0.5
216,812 - CCNA_00202 0.57 +0.2
216,840 + CCNA_00202 0.59 +3.6
216,848 - CCNA_00202 0.60 -1.0
216,848 - CCNA_00202 0.60 +0.8
216,893 + CCNA_00202 0.64 +0.7
216,901 - CCNA_00202 0.65 +0.0
216,912 + CCNA_00202 0.66 +2.1
216,956 - CCNA_00202 0.70 +0.0
216,956 - CCNA_00202 0.70 -0.2
216,964 - CCNA_00202 0.71 +0.4
216,987 - CCNA_00202 0.73 +0.8
217,064 + CCNA_00202 0.80 +1.6
217,074 + CCNA_00202 0.81 +1.9
217,074 + CCNA_00202 0.81 +2.1
217,082 + CCNA_00202 0.82 +1.7
217,120 + CCNA_00202 0.86 +1.5
217,129 - CCNA_00202 0.87 -0.4
217,166 + +2.4
217,202 + +1.5
217,214 + +1.9
217,216 + +1.9
217,255 - +2.4
217,260 - -0.2
217,260 - -0.6
217,354 - -0.7
217,354 - +0.8
217,354 - +0.0
217,354 - -1.7
217,396 - +0.8
217,398 - -0.4
217,419 - -0.7
217,420 - -0.7
217,429 + CCNA_00203 0.10 -0.8
217,446 - CCNA_00203 0.12 +0.8
217,446 - CCNA_00203 0.12 -1.5
217,472 + CCNA_00203 0.14 -1.8
217,480 - CCNA_00203 0.15 -1.7
217,480 - CCNA_00203 0.15 -1.1
217,480 - CCNA_00203 0.15 +0.8
217,480 - CCNA_00203 0.15 +2.3
217,480 - CCNA_00203 0.15 -1.0
217,503 + CCNA_00203 0.17 -0.6
217,544 + CCNA_00203 0.21 -0.5
217,552 - CCNA_00203 0.22 +1.3
217,564 - CCNA_00203 0.23 +1.8
217,564 - CCNA_00203 0.23 -2.8
217,566 + CCNA_00203 0.24 -0.7
217,566 + CCNA_00203 0.24 -1.4
217,571 + CCNA_00203 0.24 -2.0
217,584 - CCNA_00203 0.25 +0.2
217,602 - CCNA_00203 0.27 -0.7
217,610 + CCNA_00203 0.28 +0.9
217,610 + CCNA_00203 0.28 -0.7
217,620 + CCNA_00203 0.29 -1.2
217,632 + CCNA_00203 0.30 -1.4
217,638 - CCNA_00203 0.31 +0.8
217,656 - CCNA_00203 0.33 +0.9
217,668 - CCNA_00203 0.34 -0.5
217,676 - CCNA_00203 0.35 +0.8
217,715 - CCNA_00203 0.39 +0.0
217,768 + CCNA_00203 0.44 -0.4
217,798 + CCNA_00203 0.47 -1.0
217,798 + CCNA_00203 0.47 -1.2
217,798 + CCNA_00203 0.47 -0.5
217,834 - CCNA_00203 0.50 -1.2
217,834 - CCNA_00203 0.50 +1.3
217,834 - CCNA_00203 0.50 -1.0
217,834 - CCNA_00203 0.50 -1.7
217,834 - CCNA_00203 0.50 +0.9
217,838 + CCNA_00203 0.51 +1.3
217,878 - CCNA_00203 0.55 -0.5
217,886 + CCNA_00203 0.56 -0.2
217,937 + CCNA_00203 0.61 +0.8
217,937 + CCNA_00203 0.61 +1.6
217,937 + CCNA_00203 0.61 -1.2
217,945 - CCNA_00203 0.61 -2.0
217,950 - CCNA_00203 0.62 +0.3
217,962 + CCNA_00203 0.63 -2.7
217,968 - CCNA_00203 0.64 -1.9
217,995 + CCNA_00203 0.66 -1.4
218,018 + CCNA_00203 0.69 +0.5
218,018 + CCNA_00203 0.69 -2.2
218,019 + CCNA_00203 0.69 -0.2
218,027 - CCNA_00203 0.70 -2.4
218,044 + CCNA_00203 0.71 -0.1
218,080 + CCNA_00203 0.75 +0.0
218,085 + CCNA_00203 0.75 -1.0
218,088 - CCNA_00203 0.76 +0.3
218,140 + CCNA_00203 0.81 -1.2
218,146 - CCNA_00203 0.81 -2.4
218,173 + CCNA_00203 0.84 -0.7
218,237 + +0.0
218,267 - -0.7
218,272 - -0.7
218,282 + +0.3
218,284 + +0.8
218,284 + +0.0
218,284 + +0.3
218,284 + +1.8
218,292 - -2.6
218,302 + -0.7
218,302 + -1.7
218,302 + -1.0
218,310 - +0.0
218,310 - -0.4
218,335 - +0.5
218,347 - -0.5
218,371 + -1.0
218,371 + -2.0
218,371 + -0.5
218,388 + -1.2
218,459 + -0.7
218,459 + -1.7
218,461 - +0.5
218,477 - +0.3
218,493 - -0.8
218,573 + CCNA_00204 0.12 -2.3
218,595 + CCNA_00204 0.14 +0.8
218,620 + CCNA_00204 0.15 -2.1
218,628 - CCNA_00204 0.15 +0.8
218,656 + CCNA_00204 0.17 -0.2
218,667 + CCNA_00204 0.17 -2.1
218,675 - CCNA_00204 0.18 -1.6
218,677 + CCNA_00204 0.18 -0.1
218,685 - CCNA_00204 0.18 -0.1
218,685 - CCNA_00204 0.18 +2.3
218,685 - +0.3
218,685 - CCNA_00204 0.18 +2.3
218,685 - CCNA_00204 0.18 -0.4
218,685 - CCNA_00204 0.18 +0.8
218,696 + CCNA_00204 0.19 -0.1
218,742 - CCNA_00204 0.21 -1.4
218,745 + CCNA_00204 0.22 -1.4
218,753 - CCNA_00204 0.22 -2.8
218,755 + CCNA_00204 0.22 -2.4
218,758 + CCNA_00204 0.22 +0.0
218,831 + CCNA_00204 0.26 -0.8
218,831 + CCNA_00204 0.26 +0.1
218,883 + CCNA_00204 0.29 +0.7
218,891 - CCNA_00204 0.29 -0.1
218,901 - CCNA_00204 0.30 -1.2
218,906 + CCNA_00204 0.30 +0.8
218,906 + CCNA_00204 0.30 -0.2
218,911 + CCNA_00204 0.30 -1.1
218,914 - CCNA_00204 0.30 -2.5
218,914 - CCNA_00204 0.30 +0.3
218,914 - CCNA_00204 0.30 +0.1
218,914 - CCNA_00204 0.30 -0.2
218,921 - CCNA_00204 0.31 +0.3
219,012 - CCNA_00204 0.36 -0.5
219,055 + CCNA_00204 0.38 +1.3
219,058 - CCNA_00204 0.38 -1.9
219,100 - CCNA_00204 0.40 -2.1
219,120 + CCNA_00204 0.41 -0.7
219,140 - CCNA_00204 0.42 -1.7
219,149 + CCNA_00204 0.43 -0.5
219,157 - CCNA_00204 0.43 -0.2
219,176 - CCNA_00204 0.44 -1.1
219,188 + CCNA_00204 0.45 +0.3
219,196 - CCNA_00204 0.45 +0.5
219,209 - CCNA_00204 0.46 -0.5
219,211 + CCNA_00204 0.46 -0.5
219,224 + CCNA_00204 0.47 -0.7
219,239 + CCNA_00204 0.47 +0.0
219,254 - CCNA_00204 0.48 -0.5
219,284 + CCNA_00204 0.50 -0.5
219,284 - CCNA_00204 0.50 +1.3
219,292 + CCNA_00204 0.50 +2.2
219,300 + CCNA_00204 0.51 -0.2
219,312 - CCNA_00204 0.51 +0.1
219,312 - CCNA_00204 0.51 -0.2
219,312 - CCNA_00204 0.51 -0.7
219,320 + CCNA_00204 0.52 +1.3
219,320 + CCNA_00204 0.52 -1.7
219,320 + CCNA_00204 0.52 -1.7
219,327 - CCNA_00204 0.52 -1.4
219,328 - CCNA_00204 0.52 +2.3
219,328 - CCNA_00204 0.52 -0.2
219,328 - CCNA_00204 0.52 -1.0
219,328 - CCNA_00204 0.52 -1.8
219,328 - CCNA_00204 0.52 -0.5

Or see this region's nucleotide sequence