Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00114

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00112 and CCNA_00113 are separated by 79 nucleotidesCCNA_00113 and CCNA_00114 are separated by 2 nucleotidesCCNA_00114 and CCNA_00115 are separated by 86 nucleotides CCNA_00112: CCNA_00112 - glyoxalase family protein, at 121,503 to 121,892 _00112 CCNA_00113: CCNA_00113 - hypothetical protein, at 121,972 to 122,544 _00113 CCNA_00114: CCNA_00114 - MarR/EmrR-family transcriptional regulator, at 122,547 to 122,852 _00114 CCNA_00115: CCNA_00115 - TolB protein, at 122,939 to 126,268 _00115 Position (kb) 122 123Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 121.557 kb on + strand, within CCNA_00112at 121.557 kb on - strand, within CCNA_00112at 121.558 kb on - strand, within CCNA_00112at 121.558 kb on - strand, within CCNA_00112at 121.582 kb on - strand, within CCNA_00112at 121.601 kb on + strand, within CCNA_00112at 121.667 kb on + strand, within CCNA_00112at 121.675 kb on - strand, within CCNA_00112at 121.689 kb on + strand, within CCNA_00112at 121.735 kb on + strand, within CCNA_00112at 121.738 kb on - strand, within CCNA_00112at 121.743 kb on - strandat 121.745 kb on + strand, within CCNA_00112at 121.745 kb on + strand, within CCNA_00112at 121.777 kb on - strand, within CCNA_00112at 121.777 kb on - strand, within CCNA_00112at 121.817 kb on + strand, within CCNA_00112at 121.850 kb on + strand, within CCNA_00112at 121.879 kb on + strandat 121.887 kb on - strandat 121.953 kb on - strandat 121.954 kb on + strandat 121.979 kb on + strandat 122.017 kb on + strandat 122.019 kb on + strandat 122.027 kb on - strandat 122.103 kb on + strand, within CCNA_00113at 122.103 kb on + strand, within CCNA_00113at 122.106 kb on - strand, within CCNA_00113at 122.111 kb on - strand, within CCNA_00113at 122.132 kb on + strand, within CCNA_00113at 122.171 kb on + strand, within CCNA_00113at 122.247 kb on + strand, within CCNA_00113at 122.248 kb on + strand, within CCNA_00113at 122.255 kb on - strand, within CCNA_00113at 122.262 kb on - strand, within CCNA_00113at 122.280 kb on + strand, within CCNA_00113at 122.292 kb on - strandat 122.373 kb on + strand, within CCNA_00113at 122.373 kb on + strand, within CCNA_00113at 122.373 kb on + strand, within CCNA_00113at 122.373 kb on + strand, within CCNA_00113at 122.373 kb on + strand, within CCNA_00113at 122.391 kb on + strand, within CCNA_00113at 122.399 kb on - strand, within CCNA_00113at 122.399 kb on - strand, within CCNA_00113at 122.399 kb on - strand, within CCNA_00113at 122.401 kb on + strand, within CCNA_00113at 122.406 kb on + strand, within CCNA_00113at 122.425 kb on + strand, within CCNA_00113at 122.433 kb on - strand, within CCNA_00113at 122.438 kb on + strand, within CCNA_00113at 122.446 kb on - strand, within CCNA_00113at 122.514 kb on + strandat 122.519 kb on - strandat 122.532 kb on - strandat 122.596 kb on + strand, within CCNA_00114at 122.608 kb on + strand, within CCNA_00114at 122.608 kb on + strand, within CCNA_00114at 122.673 kb on + strand, within CCNA_00114at 122.759 kb on + strand, within CCNA_00114at 122.759 kb on + strand, within CCNA_00114at 122.777 kb on + strand, within CCNA_00114at 122.779 kb on + strand, within CCNA_00114at 122.785 kb on - strand, within CCNA_00114at 122.787 kb on + strand, within CCNA_00114at 122.794 kb on - strand, within CCNA_00114at 122.807 kb on - strand, within CCNA_00114at 122.830 kb on - strandat 122.881 kb on + strandat 122.881 kb on + strandat 122.882 kb on + strandat 122.882 kb on + strandat 122.923 kb on - strandat 122.993 kb on - strandat 122.998 kb on - strandat 123.071 kb on - strandat 123.087 kb on - strandat 123.181 kb on - strandat 123.199 kb on + strandat 123.199 kb on + strandat 123.199 kb on + strandat 123.199 kb on + strandat 123.199 kb on + strandat 123.199 kb on + strandat 123.199 kb on + strandat 123.199 kb on + strandat 123.199 kb on + strandat 123.199 kb on + strandat 123.199 kb on + strandat 123.207 kb on - strandat 123.207 kb on - strandat 123.207 kb on - strandat 123.207 kb on - strandat 123.207 kb on - strandat 123.207 kb on - strandat 123.207 kb on - strandat 123.276 kb on - strand, within CCNA_00115at 123.299 kb on + strand, within CCNA_00115at 123.375 kb on + strand, within CCNA_00115at 123.393 kb on + strand, within CCNA_00115at 123.481 kb on + strand, within CCNA_00115at 123.481 kb on + strand, within CCNA_00115at 123.482 kb on + strand, within CCNA_00115at 123.489 kb on - strand, within CCNA_00115at 123.521 kb on - strand, within CCNA_00115at 123.521 kb on - strand, within CCNA_00115at 123.562 kb on - strand, within CCNA_00115at 123.609 kb on + strand, within CCNA_00115at 123.638 kb on + strand, within CCNA_00115at 123.646 kb on + strand, within CCNA_00115at 123.646 kb on + strand, within CCNA_00115at 123.646 kb on + strand, within CCNA_00115at 123.646 kb on + strand, within CCNA_00115at 123.646 kb on + strand, within CCNA_00115at 123.646 kb on + strand, within CCNA_00115at 123.646 kb on - strand, within CCNA_00115at 123.646 kb on - strand, within CCNA_00115at 123.654 kb on - strand, within CCNA_00115at 123.654 kb on - strand, within CCNA_00115at 123.654 kb on - strand, within CCNA_00115at 123.661 kb on + strand, within CCNA_00115at 123.661 kb on + strand, within CCNA_00115at 123.661 kb on + strand, within CCNA_00115at 123.661 kb on + strand, within CCNA_00115at 123.661 kb on + strand, within CCNA_00115at 123.680 kb on + strand, within CCNA_00115at 123.688 kb on - strand, within CCNA_00115at 123.688 kb on - strand, within CCNA_00115at 123.688 kb on - strand, within CCNA_00115at 123.716 kb on + strand, within CCNA_00115at 123.734 kb on - strand, within CCNA_00115at 123.787 kb on + strand, within CCNA_00115at 123.787 kb on + strand, within CCNA_00115at 123.792 kb on + strand, within CCNA_00115at 123.792 kb on + strand, within CCNA_00115at 123.792 kb on + strand, within CCNA_00115at 123.792 kb on + strand, within CCNA_00115at 123.800 kb on - strand, within CCNA_00115at 123.800 kb on - strand, within CCNA_00115at 123.800 kb on - strand, within CCNA_00115at 123.800 kb on - strand, within CCNA_00115at 123.800 kb on - strand, within CCNA_00115at 123.801 kb on - strand, within CCNA_00115at 123.801 kb on - strand, within CCNA_00115at 123.802 kb on + strand, within CCNA_00115at 123.812 kb on + strand, within CCNA_00115at 123.819 kb on - strand, within CCNA_00115at 123.822 kb on - strand, within CCNA_00115

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
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121,557 + CCNA_00112 0.14 -1.0
121,557 - CCNA_00112 0.14 -1.0
121,558 - CCNA_00112 0.14 -1.3
121,558 - CCNA_00112 0.14 +1.4
121,582 - CCNA_00112 0.20 +0.2
121,601 + CCNA_00112 0.25 -1.5
121,667 + CCNA_00112 0.42 -2.3
121,675 - CCNA_00112 0.44 -1.3
121,689 + CCNA_00112 0.48 -0.9
121,735 + CCNA_00112 0.59 +0.8
121,738 - CCNA_00112 0.60 -0.5
121,743 - +1.4
121,745 + CCNA_00112 0.62 -1.0
121,745 + CCNA_00112 0.62 -1.2
121,777 - CCNA_00112 0.70 +0.8
121,777 - CCNA_00112 0.70 -0.6
121,817 + CCNA_00112 0.81 -2.0
121,850 + CCNA_00112 0.89 +1.1
121,879 + +0.2
121,887 - -1.0
121,953 - -0.6
121,954 + +1.1
121,979 + -2.8
122,017 + -0.6
122,019 + -1.9
122,027 - -0.6
122,103 + CCNA_00113 0.23 -0.6
122,103 + CCNA_00113 0.23 -0.6
122,106 - CCNA_00113 0.23 -0.3
122,111 - CCNA_00113 0.24 -1.6
122,132 + CCNA_00113 0.28 +2.9
122,171 + CCNA_00113 0.35 +1.1
122,247 + CCNA_00113 0.48 -0.2
122,248 + CCNA_00113 0.48 +0.4
122,255 - CCNA_00113 0.49 +0.4
122,262 - CCNA_00113 0.51 +0.4
122,280 + CCNA_00113 0.54 -1.7
122,292 - +3.4
122,373 + CCNA_00113 0.70 +1.4
122,373 + CCNA_00113 0.70 +0.8
122,373 + CCNA_00113 0.70 -0.2
122,373 + CCNA_00113 0.70 -1.0
122,373 + CCNA_00113 0.70 -0.8
122,391 + CCNA_00113 0.73 -1.8
122,399 - CCNA_00113 0.75 +0.0
122,399 - CCNA_00113 0.75 +0.4
122,399 - CCNA_00113 0.75 +1.4
122,401 + CCNA_00113 0.75 +2.4
122,406 + CCNA_00113 0.76 -1.3
122,425 + CCNA_00113 0.79 +0.0
122,433 - CCNA_00113 0.80 -0.5
122,438 + CCNA_00113 0.81 +0.5
122,446 - CCNA_00113 0.83 +1.4
122,514 + -0.5
122,519 - -1.7
122,532 - -0.5
122,596 + CCNA_00114 0.16 +1.6
122,608 + CCNA_00114 0.20 +2.1
122,608 + CCNA_00114 0.20 +3.1
122,673 + CCNA_00114 0.41 +0.9
122,759 + CCNA_00114 0.69 +2.1
122,759 + CCNA_00114 0.69 +1.9
122,777 + CCNA_00114 0.75 +1.8
122,779 + CCNA_00114 0.76 +2.4
122,785 - CCNA_00114 0.78 +0.8
122,787 + CCNA_00114 0.78 +2.7
122,794 - CCNA_00114 0.81 -1.2
122,807 - CCNA_00114 0.85 -0.3
122,830 - +0.0
122,881 + +2.7
122,881 + -0.6
122,882 + +1.4
122,882 + +0.8
122,923 - -1.6
122,993 - -0.2
122,998 - +1.4
123,071 - +0.7
123,087 - +0.8
123,181 - +0.4
123,199 + -0.2
123,199 + +0.4
123,199 + -1.7
123,199 + -0.1
123,199 + -1.8
123,199 + +0.4
123,199 + +0.5
123,199 + -1.3
123,199 + -0.3
123,199 + +1.5
123,199 + +0.8
123,207 - -2.5
123,207 - +0.4
123,207 - -2.6
123,207 - +1.4
123,207 - -0.2
123,207 - -1.2
123,207 - -1.6
123,276 - CCNA_00115 0.10 +0.4
123,299 + CCNA_00115 0.11 +1.1
123,375 + CCNA_00115 0.13 -1.2
123,393 + CCNA_00115 0.14 +0.4
123,481 + CCNA_00115 0.16 +1.6
123,481 + CCNA_00115 0.16 +1.9
123,482 + CCNA_00115 0.16 -1.6
123,489 - CCNA_00115 0.17 -1.0
123,521 - CCNA_00115 0.17 +3.4
123,521 - CCNA_00115 0.17 +4.2
123,562 - CCNA_00115 0.19 +0.4
123,609 + CCNA_00115 0.20 +1.2
123,638 + CCNA_00115 0.21 -1.3
123,646 + CCNA_00115 0.21 -2.2
123,646 + CCNA_00115 0.21 -0.9
123,646 + CCNA_00115 0.21 -2.3
123,646 + CCNA_00115 0.21 -1.1
123,646 + CCNA_00115 0.21 -0.5
123,646 + CCNA_00115 0.21 +0.4
123,646 - CCNA_00115 0.21 -1.6
123,646 - CCNA_00115 0.21 -1.2
123,654 - CCNA_00115 0.21 +0.0
123,654 - CCNA_00115 0.21 -0.5
123,654 - CCNA_00115 0.21 -2.0
123,661 + CCNA_00115 0.22 +2.1
123,661 + CCNA_00115 0.22 -1.7
123,661 + CCNA_00115 0.22 +0.4
123,661 + CCNA_00115 0.22 +2.4
123,661 + CCNA_00115 0.22 -2.3
123,680 + CCNA_00115 0.22 -0.6
123,688 - CCNA_00115 0.22 +2.4
123,688 - CCNA_00115 0.22 +0.8
123,688 - CCNA_00115 0.22 -0.2
123,716 + CCNA_00115 0.23 +0.6
123,734 - CCNA_00115 0.24 +2.9
123,787 + CCNA_00115 0.25 -1.9
123,787 + CCNA_00115 0.25 -0.5
123,792 + CCNA_00115 0.26 +0.3
123,792 + CCNA_00115 0.26 -1.0
123,792 + CCNA_00115 0.26 -1.2
123,792 + CCNA_00115 0.26 -1.3
123,800 - CCNA_00115 0.26 -2.5
123,800 - CCNA_00115 0.26 +0.4
123,800 - CCNA_00115 0.26 -2.2
123,800 - CCNA_00115 0.26 -2.6
123,800 - CCNA_00115 0.26 -1.6
123,801 - CCNA_00115 0.26 -2.0
123,801 - CCNA_00115 0.26 +2.4
123,802 + CCNA_00115 0.26 -1.4
123,812 + CCNA_00115 0.26 -0.6
123,819 - CCNA_00115 0.26 +0.8
123,822 - CCNA_00115 0.27 +0.0

Or see this region's nucleotide sequence