Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00106 and CCNA_00107 are separated by 160 nucleotides CCNA_00107 and CCNA_00108 are separated by 9 nucleotides CCNA_00108 and CCNA_00109 are separated by 15 nucleotides
CCNA_00106: CCNA_00106 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 116,834 to 118,099
_00106
CCNA_00107: CCNA_00107 - Trm112p-like protein, at 118,260 to 118,457
_00107
CCNA_00108: CCNA_00108 - lon endopeptidase-related protein, at 118,467 to 119,144
_00108
CCNA_00109: CCNA_00109 - thioredoxin, at 119,160 to 120,059
_00109
Position (kb)
118
119 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 118.069 kb on + strand at 118.086 kb on + strand at 118.094 kb on + strand at 118.162 kb on + strand at 118.165 kb on - strand at 118.170 kb on - strand at 118.170 kb on - strand at 118.175 kb on - strand at 118.177 kb on + strand at 118.231 kb on - strand at 118.254 kb on - strand at 118.264 kb on - strand at 118.290 kb on - strand, within CCNA_00107 at 118.461 kb on - strand at 118.461 kb on - strand at 118.461 kb on - strand at 118.465 kb on + strand at 118.521 kb on - strand at 118.521 kb on - strand at 118.561 kb on + strand, within CCNA_00108 at 118.615 kb on + strand, within CCNA_00108 at 118.615 kb on + strand, within CCNA_00108 at 118.623 kb on - strand, within CCNA_00108 at 118.628 kb on - strand, within CCNA_00108 at 118.629 kb on + strand, within CCNA_00108 at 118.687 kb on - strand, within CCNA_00108 at 118.699 kb on - strand at 118.752 kb on + strand, within CCNA_00108 at 118.762 kb on + strand, within CCNA_00108 at 118.770 kb on - strand, within CCNA_00108 at 118.770 kb on - strand, within CCNA_00108 at 118.796 kb on - strand, within CCNA_00108 at 118.817 kb on + strand, within CCNA_00108 at 118.825 kb on - strand, within CCNA_00108 at 118.828 kb on + strand, within CCNA_00108 at 118.836 kb on - strand, within CCNA_00108 at 118.848 kb on + strand, within CCNA_00108 at 118.860 kb on - strand, within CCNA_00108 at 118.881 kb on - strand, within CCNA_00108 at 118.881 kb on - strand, within CCNA_00108 at 118.893 kb on + strand, within CCNA_00108 at 118.906 kb on + strand, within CCNA_00108 at 118.914 kb on - strand, within CCNA_00108 at 118.925 kb on + strand, within CCNA_00108 at 118.928 kb on - strand, within CCNA_00108 at 118.928 kb on - strand, within CCNA_00108 at 118.933 kb on - strand, within CCNA_00108 at 118.973 kb on + strand, within CCNA_00108 at 119.018 kb on + strand, within CCNA_00108 at 119.026 kb on - strand, within CCNA_00108 at 119.033 kb on + strand, within CCNA_00108 at 119.033 kb on + strand, within CCNA_00108 at 119.041 kb on - strand, within CCNA_00108 at 119.054 kb on + strand, within CCNA_00108 at 119.059 kb on + strand, within CCNA_00108 at 119.080 kb on - strand at 119.080 kb on - strand at 119.102 kb on - strand at 119.104 kb on + strand at 119.151 kb on - strand at 119.151 kb on - strand at 119.153 kb on + strand at 119.170 kb on - strand at 119.171 kb on - strand at 119.173 kb on + strand at 119.178 kb on + strand at 119.190 kb on - strand at 119.191 kb on - strand at 119.197 kb on + strand at 119.198 kb on + strand at 119.207 kb on + strand at 119.215 kb on - strand at 119.235 kb on - strand at 119.239 kb on + strand at 119.247 kb on - strand at 119.311 kb on + strand, within CCNA_00109 at 119.337 kb on + strand, within CCNA_00109 at 119.344 kb on + strand, within CCNA_00109 at 119.344 kb on + strand, within CCNA_00109 at 119.344 kb on + strand, within CCNA_00109 at 119.344 kb on + strand, within CCNA_00109 at 119.345 kb on - strand, within CCNA_00109 at 119.345 kb on - strand, within CCNA_00109 at 119.345 kb on - strand, within CCNA_00109 at 119.352 kb on - strand, within CCNA_00109 at 119.352 kb on - strand, within CCNA_00109 at 119.354 kb on + strand, within CCNA_00109 at 119.407 kb on - strand, within CCNA_00109 at 119.439 kb on + strand, within CCNA_00109 at 119.439 kb on + strand, within CCNA_00109 at 119.439 kb on + strand, within CCNA_00109 at 119.439 kb on + strand, within CCNA_00109 at 119.439 kb on + strand, within CCNA_00109 at 119.447 kb on - strand, within CCNA_00109 at 119.447 kb on - strand, within CCNA_00109 at 119.447 kb on - strand, within CCNA_00109 at 119.447 kb on - strand, within CCNA_00109
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 118,069 + +1.1 118,086 + +1.8 118,094 + +1.8 118,162 + +1.4 118,165 - +2.9 118,170 - -2.2 118,170 - +2.8 118,175 - +0.8 118,177 + +1.4 118,231 - +1.6 118,254 - +0.8 118,264 - +1.7 118,290 - CCNA_00107 0.15 +1.0 118,461 - +1.0 118,461 - -1.8 118,461 - -1.0 118,465 + -1.6 118,521 - +1.0 118,521 - -0.5 118,561 + CCNA_00108 0.14 +0.4 118,615 + CCNA_00108 0.22 -0.6 118,615 + CCNA_00108 0.22 -2.6 118,623 - CCNA_00108 0.23 +1.4 118,628 - CCNA_00108 0.24 +1.4 118,629 + CCNA_00108 0.24 -0.9 118,687 - CCNA_00108 0.32 +1.9 118,699 - +2.7 118,752 + CCNA_00108 0.42 -1.9 118,762 + CCNA_00108 0.44 -0.5 118,770 - CCNA_00108 0.45 +0.4 118,770 - CCNA_00108 0.45 +1.2 118,796 - CCNA_00108 0.49 +0.6 118,817 + CCNA_00108 0.52 -0.1 118,825 - CCNA_00108 0.53 +0.6 118,828 + CCNA_00108 0.53 -0.5 118,836 - CCNA_00108 0.54 +1.0 118,848 + CCNA_00108 0.56 -0.1 118,860 - CCNA_00108 0.58 +2.5 118,881 - CCNA_00108 0.61 +2.6 118,881 - CCNA_00108 0.61 +1.0 118,893 + CCNA_00108 0.63 -1.1 118,906 + CCNA_00108 0.65 +1.8 118,914 - CCNA_00108 0.66 +1.2 118,925 + CCNA_00108 0.68 +2.4 118,928 - CCNA_00108 0.68 -0.0 118,928 - CCNA_00108 0.68 -0.9 118,933 - CCNA_00108 0.69 +1.1 118,973 + CCNA_00108 0.75 +0.1 119,018 + CCNA_00108 0.81 -1.8 119,026 - CCNA_00108 0.82 -0.6 119,033 + CCNA_00108 0.83 +1.4 119,033 + CCNA_00108 0.83 -1.7 119,041 - CCNA_00108 0.85 +0.5 119,054 + CCNA_00108 0.87 -1.3 119,059 + CCNA_00108 0.87 -0.6 119,080 - +2.7 119,080 - +2.9 119,102 - +1.4 119,104 + -0.3 119,151 - +2.4 119,151 - +1.4 119,153 + -1.3 119,170 - +0.5 119,171 - +0.9 119,173 + +1.4 119,178 + -2.1 119,190 - +1.3 119,191 - +1.8 119,197 + -1.3 119,198 + -1.0 119,207 + +0.3 119,215 - -0.1 119,235 - +1.6 119,239 + -0.5 119,247 - +1.1 119,311 + CCNA_00109 0.17 -0.1 119,337 + CCNA_00109 0.20 -1.2 119,344 + CCNA_00109 0.20 +0.8 119,344 + CCNA_00109 0.20 +1.8 119,344 + CCNA_00109 0.20 +0.0 119,344 + CCNA_00109 0.20 +1.0 119,345 - CCNA_00109 0.21 +1.4 119,345 - CCNA_00109 0.21 +0.2 119,345 - CCNA_00109 0.21 +1.4 119,352 - CCNA_00109 0.21 -0.2 119,352 - CCNA_00109 0.21 +1.3 119,354 + CCNA_00109 0.22 -0.6 119,407 - CCNA_00109 0.27 -0.6 119,439 + CCNA_00109 0.31 +0.0 119,439 + CCNA_00109 0.31 -1.0 119,439 + CCNA_00109 0.31 +1.4 119,439 + CCNA_00109 0.31 -0.2 119,439 + CCNA_00109 0.31 -1.6 119,447 - CCNA_00109 0.32 -0.2 119,447 - CCNA_00109 0.32 +0.8 119,447 - CCNA_00109 0.32 +0.9 119,447 - CCNA_00109 0.32 +0.1
Or see this region's nucleotide sequence