Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00087

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00086 and CCNA_00087 are separated by 337 nucleotidesCCNA_00087 and CCNA_00088 are separated by 103 nucleotides CCNA_00086: CCNA_00086 - NAD-specific glutamate dehydrogenase GdhZ, at 91,467 to 96,290 _00086 CCNA_00087: CCNA_00087 - conserved membrane spanning protein, at 96,628 to 97,737 _00087 CCNA_00088: CCNA_00088 - HerA helicase-related ATPase, at 97,841 to 99,385 _00088 Position (kb) 96 97 98Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 96.363 kb on + strandat 96.366 kb on - strandat 96.428 kb on - strandat 96.430 kb on - strandat 96.537 kb on + strandat 96.537 kb on + strandat 96.545 kb on - strandat 96.545 kb on - strandat 96.550 kb on - strandat 96.555 kb on - strandat 96.586 kb on + strandat 96.586 kb on + strandat 96.586 kb on + strandat 96.594 kb on - strandat 96.594 kb on - strandat 96.613 kb on + strandat 96.621 kb on - strandat 96.666 kb on - strandat 96.666 kb on - strandat 96.670 kb on + strandat 96.670 kb on + strandat 96.675 kb on + strandat 96.678 kb on - strandat 96.678 kb on - strandat 96.678 kb on - strandat 96.695 kb on - strandat 96.719 kb on + strandat 96.719 kb on + strandat 96.719 kb on + strandat 96.727 kb on - strandat 96.729 kb on + strandat 96.737 kb on - strandat 96.737 kb on - strandat 96.760 kb on - strand, within CCNA_00087at 96.787 kb on + strand, within CCNA_00087at 96.796 kb on - strand, within CCNA_00087at 96.809 kb on + strand, within CCNA_00087at 96.919 kb on - strand, within CCNA_00087at 96.922 kb on - strand, within CCNA_00087at 96.955 kb on - strand, within CCNA_00087at 96.994 kb on + strand, within CCNA_00087at 97.034 kb on + strand, within CCNA_00087at 97.051 kb on + strand, within CCNA_00087at 97.075 kb on + strand, within CCNA_00087at 97.118 kb on + strand, within CCNA_00087at 97.131 kb on + strand, within CCNA_00087at 97.131 kb on + strand, within CCNA_00087at 97.134 kb on - strand, within CCNA_00087at 97.139 kb on - strand, within CCNA_00087at 97.247 kb on - strand, within CCNA_00087at 97.253 kb on - strand, within CCNA_00087at 97.255 kb on + strand, within CCNA_00087at 97.285 kb on + strand, within CCNA_00087at 97.286 kb on - strand, within CCNA_00087at 97.302 kb on - strand, within CCNA_00087at 97.371 kb on + strand, within CCNA_00087at 97.371 kb on + strand, within CCNA_00087at 97.371 kb on + strand, within CCNA_00087at 97.399 kb on + strand, within CCNA_00087at 97.404 kb on + strand, within CCNA_00087at 97.412 kb on - strand, within CCNA_00087at 97.425 kb on + strand, within CCNA_00087at 97.433 kb on - strand, within CCNA_00087at 97.433 kb on - strand, within CCNA_00087at 97.500 kb on - strand, within CCNA_00087at 97.509 kb on + strand, within CCNA_00087at 97.524 kb on - strand, within CCNA_00087at 97.574 kb on + strand, within CCNA_00087at 97.574 kb on + strand, within CCNA_00087at 97.582 kb on - strand, within CCNA_00087at 97.632 kb on - strandat 97.653 kb on + strandat 97.654 kb on + strandat 97.707 kb on - strandat 97.790 kb on + strandat 97.797 kb on + strandat 97.809 kb on + strandat 97.823 kb on + strandat 97.823 kb on + strandat 97.823 kb on + strandat 97.823 kb on + strandat 97.831 kb on - strandat 97.831 kb on - strandat 97.889 kb on + strandat 97.968 kb on + strandat 98.014 kb on + strand, within CCNA_00088at 98.039 kb on + strand, within CCNA_00088at 98.091 kb on - strand, within CCNA_00088at 98.111 kb on - strandat 98.139 kb on + strand, within CCNA_00088at 98.161 kb on + strand, within CCNA_00088at 98.167 kb on + strand, within CCNA_00088at 98.206 kb on + strand, within CCNA_00088at 98.217 kb on + strand, within CCNA_00088at 98.224 kb on + strand, within CCNA_00088at 98.232 kb on - strand, within CCNA_00088at 98.232 kb on - strand, within CCNA_00088at 98.267 kb on - strand, within CCNA_00088at 98.278 kb on + strand, within CCNA_00088at 98.299 kb on + strand, within CCNA_00088at 98.308 kb on + strandat 98.340 kb on + strand, within CCNA_00088at 98.360 kb on + strand, within CCNA_00088at 98.362 kb on + strand, within CCNA_00088at 98.391 kb on + strand, within CCNA_00088at 98.391 kb on + strand, within CCNA_00088at 98.404 kb on - strand, within CCNA_00088at 98.407 kb on + strand, within CCNA_00088at 98.422 kb on + strand, within CCNA_00088at 98.440 kb on + strand, within CCNA_00088at 98.442 kb on + strand, within CCNA_00088at 98.457 kb on + strand, within CCNA_00088at 98.457 kb on + strand, within CCNA_00088at 98.457 kb on + strand, within CCNA_00088at 98.465 kb on - strand, within CCNA_00088at 98.465 kb on - strand, within CCNA_00088at 98.467 kb on + strand, within CCNA_00088at 98.509 kb on - strand, within CCNA_00088at 98.551 kb on + strand, within CCNA_00088at 98.551 kb on + strand, within CCNA_00088at 98.559 kb on - strand, within CCNA_00088at 98.584 kb on + strand, within CCNA_00088at 98.587 kb on + strand, within CCNA_00088at 98.602 kb on - strand, within CCNA_00088at 98.625 kb on - strand, within CCNA_00088at 98.631 kb on - strand, within CCNA_00088at 98.662 kb on + strand, within CCNA_00088at 98.662 kb on + strand, within CCNA_00088at 98.662 kb on + strand, within CCNA_00088at 98.670 kb on - strand, within CCNA_00088at 98.670 kb on - strand, within CCNA_00088at 98.670 kb on - strand, within CCNA_00088at 98.712 kb on + strand, within CCNA_00088

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
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96,363 + -0.6
96,366 - +0.0
96,428 - -2.5
96,430 - +0.2
96,537 + +0.0
96,537 + -1.9
96,545 - +1.7
96,545 - +2.1
96,550 - +2.3
96,555 - +1.4
96,586 + +0.0
96,586 + -1.5
96,586 + +0.2
96,594 - +2.4
96,594 - +2.4
96,613 + -0.2
96,621 - -1.2
96,666 - -1.0
96,666 - -2.8
96,670 + -0.5
96,670 + +1.4
96,675 + -0.8
96,678 - +1.1
96,678 - -1.7
96,678 - -1.6
96,695 - -1.6
96,719 + +0.0
96,719 + -1.5
96,719 + -1.6
96,727 - -0.8
96,729 + -0.9
96,737 - +0.8
96,737 - +1.4
96,760 - CCNA_00087 0.12 +0.5
96,787 + CCNA_00087 0.14 -0.5
96,796 - CCNA_00087 0.15 -0.6
96,809 + CCNA_00087 0.16 -0.5
96,919 - CCNA_00087 0.26 -1.5
96,922 - CCNA_00087 0.26 -1.0
96,955 - CCNA_00087 0.29 -0.3
96,994 + CCNA_00087 0.33 -2.7
97,034 + CCNA_00087 0.37 -1.2
97,051 + CCNA_00087 0.38 -1.2
97,075 + CCNA_00087 0.40 -1.6
97,118 + CCNA_00087 0.44 +0.0
97,131 + CCNA_00087 0.45 -0.9
97,131 + CCNA_00087 0.45 -2.0
97,134 - CCNA_00087 0.46 -1.0
97,139 - CCNA_00087 0.46 -0.1
97,247 - CCNA_00087 0.56 -0.6
97,253 - CCNA_00087 0.56 +0.4
97,255 + CCNA_00087 0.56 +0.8
97,285 + CCNA_00087 0.59 -1.5
97,286 - CCNA_00087 0.59 +1.4
97,302 - CCNA_00087 0.61 +0.4
97,371 + CCNA_00087 0.67 +0.4
97,371 + CCNA_00087 0.67 +0.0
97,371 + CCNA_00087 0.67 +1.4
97,399 + CCNA_00087 0.69 -1.5
97,404 + CCNA_00087 0.70 -2.8
97,412 - CCNA_00087 0.71 -0.2
97,425 + CCNA_00087 0.72 -1.5
97,433 - CCNA_00087 0.73 -0.8
97,433 - CCNA_00087 0.73 +1.0
97,500 - CCNA_00087 0.79 +0.0
97,509 + CCNA_00087 0.79 -1.9
97,524 - CCNA_00087 0.81 +3.0
97,574 + CCNA_00087 0.85 -1.0
97,574 + CCNA_00087 0.85 -1.1
97,582 - CCNA_00087 0.86 -1.0
97,632 - -1.9
97,653 + -0.6
97,654 + -0.5
97,707 - -0.5
97,790 + -0.5
97,797 + +0.3
97,809 + -1.5
97,823 + +0.8
97,823 + +0.7
97,823 + -2.6
97,823 + +2.4
97,831 - +1.4
97,831 - -0.8
97,889 + +1.1
97,968 + -0.3
98,014 + CCNA_00088 0.11 -0.3
98,039 + CCNA_00088 0.13 +0.4
98,091 - CCNA_00088 0.16 +0.8
98,111 - +1.4
98,139 + CCNA_00088 0.19 +0.0
98,161 + CCNA_00088 0.21 +0.8
98,167 + CCNA_00088 0.21 +0.9
98,206 + CCNA_00088 0.24 -0.4
98,217 + CCNA_00088 0.24 -0.4
98,224 + CCNA_00088 0.25 -0.1
98,232 - CCNA_00088 0.25 -0.5
98,232 - CCNA_00088 0.25 -0.2
98,267 - CCNA_00088 0.28 -1.5
98,278 + CCNA_00088 0.28 +0.7
98,299 + CCNA_00088 0.30 +1.2
98,308 + +2.4
98,340 + CCNA_00088 0.32 +1.9
98,360 + CCNA_00088 0.34 +2.6
98,362 + CCNA_00088 0.34 -0.9
98,391 + CCNA_00088 0.36 +0.7
98,391 + CCNA_00088 0.36 +0.4
98,404 - CCNA_00088 0.36 -0.8
98,407 + CCNA_00088 0.37 +0.1
98,422 + CCNA_00088 0.38 -0.4
98,440 + CCNA_00088 0.39 -0.2
98,442 + CCNA_00088 0.39 +2.4
98,457 + CCNA_00088 0.40 +0.6
98,457 + CCNA_00088 0.40 -0.2
98,457 + CCNA_00088 0.40 +0.0
98,465 - CCNA_00088 0.40 +0.8
98,465 - CCNA_00088 0.40 +0.2
98,467 + CCNA_00088 0.41 +1.7
98,509 - CCNA_00088 0.43 +0.0
98,551 + CCNA_00088 0.46 -0.4
98,551 + CCNA_00088 0.46 -0.5
98,559 - CCNA_00088 0.46 +0.0
98,584 + CCNA_00088 0.48 -1.2
98,587 + CCNA_00088 0.48 -1.2
98,602 - CCNA_00088 0.49 -1.3
98,625 - CCNA_00088 0.51 -0.5
98,631 - CCNA_00088 0.51 -0.2
98,662 + CCNA_00088 0.53 -1.4
98,662 + CCNA_00088 0.53 -0.2
98,662 + CCNA_00088 0.53 -1.1
98,670 - CCNA_00088 0.54 -1.3
98,670 - CCNA_00088 0.54 +0.8
98,670 - CCNA_00088 0.54 +0.4
98,712 + CCNA_00088 0.56 +1.2

Or see this region's nucleotide sequence