Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00042 and CCNA_00043 are separated by 78 nucleotides CCNA_00043 and CCNA_00044 are separated by 2 nucleotides CCNA_00044 and CCNA_00045 are separated by 258 nucleotides
CCNA_00042: CCNA_00042 - RNA-binding protein, YlxR family, at 45,893 to 46,543
_00042
CCNA_00043: CCNA_00043 - N utilization substance protein A NusA, at 46,622 to 48,268
_00043
CCNA_00044: CCNA_00044 - ribosome maturation protein RimP, at 48,271 to 48,846
_00044
CCNA_00045: CCNA_00045 - inorganic pyrophosphatase, at 49,105 to 49,638
_00045
Position (kb) 46
47
48
49 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 45.628 kb on - strand at 45.720 kb on - strand at 45.859 kb on - strand at 46.488 kb on + strand at 46.518 kb on + strand at 46.556 kb on + strand at 46.556 kb on + strand at 46.564 kb on - strand at 46.608 kb on - strand at 46.618 kb on - strand at 46.618 kb on - strand at 46.620 kb on + strand at 46.627 kb on - strand at 46.627 kb on - strand at 46.627 kb on - strand at 46.627 kb on - strand at 46.627 kb on - strand at 46.627 kb on - strand at 46.628 kb on - strand at 46.655 kb on + strand at 46.655 kb on + strand at 46.716 kb on + strand at 46.716 kb on + strand at 46.876 kb on - strand, within CCNA_00043 at 46.903 kb on - strand, within CCNA_00043 at 46.908 kb on - strand, within CCNA_00043 at 46.908 kb on - strand, within CCNA_00043 at 46.916 kb on - strand, within CCNA_00043 at 46.921 kb on - strand, within CCNA_00043 at 46.921 kb on - strand, within CCNA_00043 at 46.937 kb on + strand, within CCNA_00043 at 46.955 kb on + strand, within CCNA_00043 at 46.962 kb on + strand, within CCNA_00043 at 46.963 kb on - strand, within CCNA_00043 at 46.963 kb on - strand, within CCNA_00043 at 46.970 kb on - strand, within CCNA_00043 at 48.277 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.302 kb on - strand at 48.367 kb on - strand, within CCNA_00044 at 48.367 kb on - strand, within CCNA_00044 at 48.377 kb on - strand, within CCNA_00044 at 48.385 kb on - strand, within CCNA_00044 at 48.403 kb on - strand, within CCNA_00044 at 48.438 kb on - strand, within CCNA_00044 at 48.478 kb on - strand, within CCNA_00044 at 48.478 kb on - strand, within CCNA_00044 at 48.495 kb on - strand, within CCNA_00044 at 48.576 kb on - strand, within CCNA_00044 at 48.662 kb on - strand, within CCNA_00044 at 49.019 kb on - strand at 49.039 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 45,628 - +2.5 45,720 - +1.4 45,859 - +0.2 46,488 + +2.4 46,518 + -0.5 46,556 + -1.1 46,556 + -0.2 46,564 - +1.2 46,608 - +2.6 46,618 - +3.4 46,618 - +3.0 46,620 + -1.0 46,627 - +3.0 46,627 - +2.1 46,627 - +2.2 46,627 - +2.8 46,627 - +2.7 46,627 - +3.2 46,628 - +3.1 46,655 + +0.9 46,655 + -1.0 46,716 + -0.2 46,716 + -2.0 46,876 - CCNA_00043 0.15 -1.6 46,903 - CCNA_00043 0.17 +0.0 46,908 - CCNA_00043 0.17 -0.1 46,908 - CCNA_00043 0.17 -0.6 46,916 - CCNA_00043 0.18 -1.6 46,921 - CCNA_00043 0.18 -3.8 46,921 - CCNA_00043 0.18 -2.8 46,937 + CCNA_00043 0.19 +0.8 46,955 + CCNA_00043 0.20 +0.4 46,962 + CCNA_00043 0.21 +2.4 46,963 - CCNA_00043 0.21 -1.0 46,963 - CCNA_00043 0.21 -1.9 46,970 - CCNA_00043 0.21 -1.9 48,277 - +0.2 48,302 - -0.7 48,302 - +2.5 48,302 - +2.4 48,302 - +0.7 48,302 - +2.1 48,302 - +2.1 48,302 - +0.6 48,302 - +2.1 48,367 - CCNA_00044 0.17 +2.9 48,367 - CCNA_00044 0.17 +2.0 48,377 - CCNA_00044 0.18 +0.2 48,385 - CCNA_00044 0.20 -0.3 48,403 - CCNA_00044 0.23 -1.0 48,438 - CCNA_00044 0.29 -1.5 48,478 - CCNA_00044 0.36 -2.0 48,478 - CCNA_00044 0.36 -1.3 48,495 - CCNA_00044 0.39 +0.5 48,576 - CCNA_00044 0.53 -0.8 48,662 - CCNA_00044 0.68 -2.3 49,019 - +0.4 49,039 + -0.6
Or see this region's nucleotide sequence