Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00036

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00034 and CCNA_00035 are separated by 14 nucleotidesCCNA_00035 and CCNA_00036 are separated by 2 nucleotidesCCNA_00036 and CCNA_00037 are separated by 100 nucleotidesCCNA_00037 and CCNA_00038 are separated by 59 nucleotides CCNA_00034: CCNA_00034 - SSU ribosomal protein S15P, at 38,211 to 38,480 _00034 CCNA_00035: CCNA_00035 - tRNA pseudouridine synthase B, at 38,495 to 39,427 _00035 CCNA_00036: CCNA_00036 - ribosome-binding factor A, at 39,430 to 39,879 _00036 CCNA_00037: CCNA_00037 - esterase lipase family protein, at 39,980 to 40,768 _00037 CCNA_00038: CCNA_00038 - hypothetical protein, at 40,828 to 41,403 _00038 Position (kb) 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 38.815 kb on + strand, within CCNA_00035at 38.823 kb on - strand, within CCNA_00035at 38.823 kb on - strand, within CCNA_00035at 38.867 kb on - strand, within CCNA_00035at 38.870 kb on + strand, within CCNA_00035at 38.871 kb on + strand, within CCNA_00035at 38.890 kb on + strand, within CCNA_00035at 38.916 kb on - strand, within CCNA_00035at 38.942 kb on - strand, within CCNA_00035at 38.949 kb on + strand, within CCNA_00035at 38.953 kb on - strand, within CCNA_00035at 38.975 kb on - strand, within CCNA_00035at 39.016 kb on + strand, within CCNA_00035at 39.016 kb on + strand, within CCNA_00035at 39.024 kb on - strand, within CCNA_00035at 39.048 kb on + strand, within CCNA_00035at 39.120 kb on - strand, within CCNA_00035at 39.130 kb on + strand, within CCNA_00035at 39.130 kb on + strand, within CCNA_00035at 39.130 kb on + strand, within CCNA_00035at 39.130 kb on + strand, within CCNA_00035at 39.130 kb on + strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.190 kb on - strand, within CCNA_00035at 39.236 kb on + strand, within CCNA_00035at 39.245 kb on - strand, within CCNA_00035at 39.268 kb on + strand, within CCNA_00035at 39.273 kb on + strand, within CCNA_00035at 39.281 kb on - strand, within CCNA_00035at 39.348 kb on + strandat 39.351 kb on - strandat 39.359 kb on + strandat 39.362 kb on - strandat 39.372 kb on - strandat 39.372 kb on - strandat 39.380 kb on - strandat 39.385 kb on - strandat 39.392 kb on + strandat 39.428 kb on + strandat 39.429 kb on - strandat 39.433 kb on + strandat 39.433 kb on + strandat 39.436 kb on - strandat 39.464 kb on - strandat 39.464 kb on - strandat 39.480 kb on + strand, within CCNA_00036at 39.483 kb on - strand, within CCNA_00036at 39.741 kb on - strand, within CCNA_00036at 39.883 kb on + strandat 39.950 kb on + strandat 39.956 kb on - strandat 39.956 kb on - strandat 39.978 kb on + strandat 39.978 kb on + strandat 39.986 kb on - strandat 39.986 kb on - strandat 39.993 kb on - strandat 40.027 kb on + strandat 40.035 kb on - strandat 40.035 kb on - strandat 40.035 kb on - strandat 40.043 kb on + strandat 40.043 kb on + strandat 40.043 kb on + strandat 40.051 kb on - strandat 40.051 kb on - strandat 40.051 kb on - strandat 40.056 kb on - strandat 40.063 kb on + strand, within CCNA_00037at 40.070 kb on + strand, within CCNA_00037at 40.071 kb on - strand, within CCNA_00037at 40.075 kb on + strand, within CCNA_00037at 40.078 kb on - strand, within CCNA_00037at 40.078 kb on - strand, within CCNA_00037at 40.088 kb on - strand, within CCNA_00037at 40.134 kb on + strand, within CCNA_00037at 40.134 kb on - strand, within CCNA_00037at 40.141 kb on - strand, within CCNA_00037at 40.142 kb on - strand, within CCNA_00037at 40.158 kb on + strand, within CCNA_00037at 40.158 kb on + strand, within CCNA_00037at 40.158 kb on + strand, within CCNA_00037at 40.166 kb on - strandat 40.166 kb on - strand, within CCNA_00037at 40.168 kb on - strand, within CCNA_00037at 40.236 kb on + strand, within CCNA_00037at 40.280 kb on + strand, within CCNA_00037at 40.280 kb on + strand, within CCNA_00037at 40.288 kb on - strand, within CCNA_00037at 40.288 kb on - strand, within CCNA_00037at 40.288 kb on - strand, within CCNA_00037at 40.288 kb on - strand, within CCNA_00037at 40.288 kb on - strand, within CCNA_00037at 40.296 kb on + strand, within CCNA_00037at 40.338 kb on + strand, within CCNA_00037at 40.343 kb on + strand, within CCNA_00037at 40.363 kb on + strand, within CCNA_00037at 40.405 kb on - strand, within CCNA_00037at 40.422 kb on + strand, within CCNA_00037at 40.422 kb on + strand, within CCNA_00037at 40.430 kb on - strand, within CCNA_00037at 40.430 kb on - strand, within CCNA_00037at 40.435 kb on + strand, within CCNA_00037at 40.465 kb on + strand, within CCNA_00037at 40.473 kb on - strand, within CCNA_00037at 40.506 kb on + strand, within CCNA_00037at 40.514 kb on - strand, within CCNA_00037at 40.514 kb on - strand, within CCNA_00037at 40.576 kb on + strand, within CCNA_00037at 40.601 kb on - strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.633 kb on - strandat 40.633 kb on - strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.646 kb on + strandat 40.678 kb on + strandat 40.678 kb on + strand, within CCNA_00037at 40.686 kb on - strand, within CCNA_00037at 40.745 kb on + strandat 40.795 kb on + strandat 40.795 kb on + strandat 40.795 kb on + strandat 40.795 kb on + strandat 40.795 kb on + strandat 40.795 kb on + strandat 40.795 kb on + strandat 40.795 kb on + strandat 40.796 kb on + strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.823 kb on - strandat 40.825 kb on + strandat 40.847 kb on - strandat 40.847 kb on - strandat 40.848 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
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38,815 + CCNA_00035 0.34 -0.2
38,823 - CCNA_00035 0.35 +2.1
38,823 - CCNA_00035 0.35 +3.0
38,867 - CCNA_00035 0.40 +2.4
38,870 + CCNA_00035 0.40 +0.8
38,871 + CCNA_00035 0.40 -1.2
38,890 + CCNA_00035 0.42 -1.0
38,916 - CCNA_00035 0.45 +1.4
38,942 - CCNA_00035 0.48 +1.7
38,949 + CCNA_00035 0.49 +0.8
38,953 - CCNA_00035 0.49 +1.6
38,975 - CCNA_00035 0.51 +1.2
39,016 + CCNA_00035 0.56 +0.4
39,016 + CCNA_00035 0.56 -1.3
39,024 - CCNA_00035 0.57 +1.6
39,048 + CCNA_00035 0.59 +0.5
39,120 - CCNA_00035 0.67 +1.4
39,130 + CCNA_00035 0.68 -0.7
39,130 + CCNA_00035 0.68 -2.2
39,130 + CCNA_00035 0.68 -1.2
39,130 + CCNA_00035 0.68 +0.8
39,130 + CCNA_00035 0.68 -0.3
39,138 - CCNA_00035 0.69 +0.4
39,138 - CCNA_00035 0.69 +0.8
39,138 - CCNA_00035 0.69 +1.8
39,138 - CCNA_00035 0.69 +2.1
39,138 - CCNA_00035 0.69 +1.2
39,138 - CCNA_00035 0.69 +1.6
39,190 - CCNA_00035 0.74 +1.2
39,236 + CCNA_00035 0.79 -1.5
39,245 - CCNA_00035 0.80 +1.6
39,268 + CCNA_00035 0.83 -0.2
39,273 + CCNA_00035 0.83 -0.8
39,281 - CCNA_00035 0.84 +1.5
39,348 + -1.5
39,351 - +1.4
39,359 + +1.4
39,362 - +1.5
39,372 - +1.6
39,372 - +1.8
39,380 - +1.3
39,385 - +1.4
39,392 + -0.2
39,428 + -1.1
39,429 - +2.0
39,433 + -0.5
39,433 + -0.8
39,436 - +0.9
39,464 - +1.6
39,464 - +1.5
39,480 + CCNA_00036 0.11 +1.4
39,483 - CCNA_00036 0.12 +2.2
39,741 - CCNA_00036 0.69 +1.4
39,883 + -1.1
39,950 + +0.8
39,956 - +2.4
39,956 - +2.3
39,978 + -1.2
39,978 + -0.2
39,986 - +2.4
39,986 - -1.3
39,993 - -0.3
40,027 + -1.1
40,035 - -0.5
40,035 - +0.8
40,035 - +0.4
40,043 + -0.9
40,043 + -1.2
40,043 + -1.6
40,051 - +0.4
40,051 - -0.5
40,051 - +0.4
40,056 - -1.5
40,063 + CCNA_00037 0.11 -2.0
40,070 + CCNA_00037 0.11 +0.3
40,071 - CCNA_00037 0.12 -2.2
40,075 + CCNA_00037 0.12 +0.0
40,078 - CCNA_00037 0.12 -1.5
40,078 - CCNA_00037 0.12 -1.0
40,088 - CCNA_00037 0.14 -0.6
40,134 + CCNA_00037 0.20 +1.0
40,134 - CCNA_00037 0.20 +0.4
40,141 - CCNA_00037 0.20 -1.0
40,142 - CCNA_00037 0.21 +0.6
40,158 + CCNA_00037 0.23 -0.2
40,158 + CCNA_00037 0.23 -1.7
40,158 + CCNA_00037 0.23 +1.2
40,166 - +2.4
40,166 - CCNA_00037 0.24 -1.9
40,168 - CCNA_00037 0.24 +1.8
40,236 + CCNA_00037 0.32 -0.2
40,280 + CCNA_00037 0.38 -1.1
40,280 + CCNA_00037 0.38 -1.1
40,288 - CCNA_00037 0.39 +0.0
40,288 - CCNA_00037 0.39 -1.6
40,288 - CCNA_00037 0.39 -0.3
40,288 - CCNA_00037 0.39 +0.2
40,288 - CCNA_00037 0.39 +0.4
40,296 + CCNA_00037 0.40 +2.4
40,338 + CCNA_00037 0.45 +0.8
40,343 + CCNA_00037 0.46 -1.3
40,363 + CCNA_00037 0.49 -3.7
40,405 - CCNA_00037 0.54 -0.6
40,422 + CCNA_00037 0.56 -0.1
40,422 + CCNA_00037 0.56 +1.4
40,430 - CCNA_00037 0.57 -2.2
40,430 - CCNA_00037 0.57 +1.1
40,435 + CCNA_00037 0.58 -2.9
40,465 + CCNA_00037 0.61 -0.6
40,473 - CCNA_00037 0.62 +0.8
40,506 + CCNA_00037 0.67 +0.4
40,514 - CCNA_00037 0.68 +0.4
40,514 - CCNA_00037 0.68 +0.4
40,576 + CCNA_00037 0.76 -2.4
40,601 - CCNA_00037 0.79 +1.0
40,625 + CCNA_00037 0.82 -1.0
40,625 + CCNA_00037 0.82 -1.6
40,625 + CCNA_00037 0.82 -0.8
40,625 + CCNA_00037 0.82 -0.2
40,625 + CCNA_00037 0.82 +0.8
40,625 + CCNA_00037 0.82 -1.1
40,633 - CCNA_00037 0.83 -2.0
40,633 - CCNA_00037 0.83 -0.6
40,633 - CCNA_00037 0.83 +0.0
40,633 - CCNA_00037 0.83 -2.3
40,633 - +1.4
40,633 - CCNA_00037 0.83 +1.9
40,633 - CCNA_00037 0.83 -0.2
40,646 + +2.4
40,678 + +3.4
40,678 + CCNA_00037 0.88 +0.4
40,686 - CCNA_00037 0.89 -2.3
40,745 + -1.9
40,795 + -2.5
40,795 + +0.4
40,795 + -1.8
40,795 + +0.4
40,795 + +0.8
40,795 + -0.5
40,795 + +0.4
40,795 + +1.4
40,796 + -0.2
40,803 - -0.4
40,803 - -1.3
40,803 - -0.9
40,803 - -0.6
40,803 - -0.8
40,803 - -2.2
40,803 - -1.2
40,823 - +0.3
40,825 + -1.0
40,847 - -0.1
40,847 - +0.8
40,848 - +1.0

Or see this region's nucleotide sequence