Experiment: Lactitol 10mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22390 and CA265_RS22395 are separated by 630 nucleotides CA265_RS22395 and CA265_RS22400 are separated by 121 nucleotides
CA265_RS22390: CA265_RS22390 - alpha-ketoglutarate transporter, at 5,495,096 to 5,496,382
_RS22390
CA265_RS22395: CA265_RS22395 - VOC family virulence protein, at 5,497,013 to 5,497,393
_RS22395
CA265_RS22400: CA265_RS22400 - AAA family ATPase, at 5,497,515 to 5,498,795
_RS22400
Position (kb) 5497
5498 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5496.013 kb on - strand, within CA265_RS22390 at 5496.043 kb on + strand, within CA265_RS22390 at 5496.048 kb on - strand, within CA265_RS22390 at 5496.066 kb on + strand, within CA265_RS22390 at 5496.136 kb on + strand, within CA265_RS22390 at 5496.137 kb on - strand, within CA265_RS22390 at 5496.137 kb on - strand, within CA265_RS22390 at 5496.137 kb on - strand, within CA265_RS22390 at 5496.137 kb on - strand, within CA265_RS22390 at 5496.209 kb on + strand, within CA265_RS22390 at 5496.210 kb on - strand, within CA265_RS22390 at 5496.216 kb on + strand, within CA265_RS22390 at 5496.259 kb on - strand at 5496.299 kb on + strand at 5496.300 kb on - strand at 5496.300 kb on - strand at 5496.337 kb on + strand at 5496.337 kb on + strand at 5496.338 kb on - strand at 5496.392 kb on - strand at 5496.518 kb on - strand at 5496.580 kb on - strand at 5496.580 kb on - strand at 5496.581 kb on + strand at 5496.582 kb on - strand at 5496.602 kb on - strand at 5496.637 kb on + strand at 5496.681 kb on + strand at 5496.682 kb on - strand at 5496.734 kb on + strand at 5496.735 kb on - strand at 5496.738 kb on - strand at 5496.738 kb on - strand at 5496.777 kb on + strand at 5496.789 kb on - strand at 5496.920 kb on + strand at 5496.920 kb on + strand at 5496.925 kb on + strand at 5496.926 kb on - strand at 5497.020 kb on + strand at 5497.021 kb on - strand at 5497.063 kb on - strand, within CA265_RS22395 at 5497.073 kb on - strand, within CA265_RS22395 at 5497.101 kb on - strand, within CA265_RS22395 at 5497.101 kb on - strand, within CA265_RS22395 at 5497.237 kb on - strand, within CA265_RS22395 at 5497.362 kb on - strand at 5497.448 kb on - strand at 5497.569 kb on + strand at 5497.570 kb on - strand at 5497.588 kb on + strand at 5497.685 kb on - strand, within CA265_RS22400 at 5497.689 kb on + strand, within CA265_RS22400 at 5497.689 kb on + strand, within CA265_RS22400 at 5497.689 kb on + strand, within CA265_RS22400 at 5497.690 kb on - strand, within CA265_RS22400 at 5497.695 kb on - strand, within CA265_RS22400 at 5497.695 kb on - strand, within CA265_RS22400 at 5497.708 kb on + strand, within CA265_RS22400 at 5497.730 kb on - strand, within CA265_RS22400 at 5497.845 kb on - strand, within CA265_RS22400 at 5497.845 kb on - strand, within CA265_RS22400 at 5497.900 kb on + strand, within CA265_RS22400 at 5497.900 kb on + strand, within CA265_RS22400 at 5497.948 kb on + strand, within CA265_RS22400 at 5498.009 kb on - strand, within CA265_RS22400 at 5498.136 kb on - strand, within CA265_RS22400 at 5498.214 kb on + strand, within CA265_RS22400 at 5498.215 kb on - strand, within CA265_RS22400 at 5498.239 kb on - strand, within CA265_RS22400 at 5498.239 kb on - strand, within CA265_RS22400 at 5498.261 kb on + strand, within CA265_RS22400
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol 10mM (C) remove 5,496,013 - CA265_RS22390 0.71 -0.9 5,496,043 + CA265_RS22390 0.74 +1.1 5,496,048 - CA265_RS22390 0.74 -0.6 5,496,066 + CA265_RS22390 0.75 +3.0 5,496,136 + CA265_RS22390 0.81 +0.8 5,496,137 - CA265_RS22390 0.81 +1.2 5,496,137 - CA265_RS22390 0.81 -2.9 5,496,137 - CA265_RS22390 0.81 +0.1 5,496,137 - CA265_RS22390 0.81 +0.8 5,496,209 + CA265_RS22390 0.86 +0.4 5,496,210 - CA265_RS22390 0.87 +0.5 5,496,216 + CA265_RS22390 0.87 +0.1 5,496,259 - -0.3 5,496,299 + +0.5 5,496,300 - +1.8 5,496,300 - +0.9 5,496,337 + +1.4 5,496,337 + +3.1 5,496,338 - +0.3 5,496,392 - -0.2 5,496,518 - -0.0 5,496,580 - -2.5 5,496,580 - +0.5 5,496,581 + +1.5 5,496,582 - +0.2 5,496,602 - -0.7 5,496,637 + +2.0 5,496,681 + -0.8 5,496,682 - -1.1 5,496,734 + +0.1 5,496,735 - +1.0 5,496,738 - +1.1 5,496,738 - -0.5 5,496,777 + -0.1 5,496,789 - -0.5 5,496,920 + +0.8 5,496,920 + -1.1 5,496,925 + +0.5 5,496,926 - +1.9 5,497,020 + +0.9 5,497,021 - +0.3 5,497,063 - CA265_RS22395 0.13 +2.6 5,497,073 - CA265_RS22395 0.16 +1.4 5,497,101 - CA265_RS22395 0.23 +0.7 5,497,101 - CA265_RS22395 0.23 +4.1 5,497,237 - CA265_RS22395 0.59 +0.4 5,497,362 - -2.6 5,497,448 - +1.4 5,497,569 + -0.6 5,497,570 - +0.0 5,497,588 + -1.0 5,497,685 - CA265_RS22400 0.13 -0.9 5,497,689 + CA265_RS22400 0.14 +2.1 5,497,689 + CA265_RS22400 0.14 -2.1 5,497,689 + CA265_RS22400 0.14 -1.5 5,497,690 - CA265_RS22400 0.14 -1.1 5,497,695 - CA265_RS22400 0.14 +0.2 5,497,695 - CA265_RS22400 0.14 +0.6 5,497,708 + CA265_RS22400 0.15 +2.3 5,497,730 - CA265_RS22400 0.17 +1.4 5,497,845 - CA265_RS22400 0.26 -1.5 5,497,845 - CA265_RS22400 0.26 -1.7 5,497,900 + CA265_RS22400 0.30 -2.3 5,497,900 + CA265_RS22400 0.30 -0.2 5,497,948 + CA265_RS22400 0.34 -0.1 5,498,009 - CA265_RS22400 0.39 -0.7 5,498,136 - CA265_RS22400 0.48 +0.1 5,498,214 + CA265_RS22400 0.55 -0.2 5,498,215 - CA265_RS22400 0.55 +0.1 5,498,239 - CA265_RS22400 0.57 -0.3 5,498,239 - CA265_RS22400 0.57 -2.5 5,498,261 + CA265_RS22400 0.58 -0.1
Or see this region's nucleotide sequence