Experiment: Lactitol 10mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS17435 and CA265_RS17440 are separated by 323 nucleotides CA265_RS17440 and CA265_RS17445 are separated by 83 nucleotides CA265_RS17445 and CA265_RS17450 are separated by 37 nucleotides
CA265_RS17435: CA265_RS17435 - DNA repair protein RecO, at 4,348,046 to 4,348,771
_RS17435
CA265_RS17440: CA265_RS17440 - Fis family transcriptional regulator, at 4,349,095 to 4,351,245
_RS17440
CA265_RS17445: CA265_RS17445 - hypothetical protein, at 4,351,329 to 4,351,925
_RS17445
CA265_RS17450: CA265_RS17450 - hypothetical protein, at 4,351,963 to 4,353,819
_RS17450
Position (kb) 4349
4350
4351
4352 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4348.106 kb on + strand at 4348.125 kb on - strand, within CA265_RS17435 at 4348.129 kb on + strand, within CA265_RS17435 at 4348.167 kb on - strand, within CA265_RS17435 at 4348.192 kb on + strand, within CA265_RS17435 at 4348.207 kb on + strand, within CA265_RS17435 at 4348.249 kb on + strand, within CA265_RS17435 at 4348.472 kb on + strand, within CA265_RS17435 at 4348.496 kb on - strand, within CA265_RS17435 at 4348.496 kb on - strand, within CA265_RS17435 at 4348.588 kb on - strand, within CA265_RS17435 at 4348.671 kb on + strand, within CA265_RS17435 at 4348.671 kb on + strand, within CA265_RS17435 at 4348.729 kb on - strand at 4348.729 kb on - strand at 4348.797 kb on + strand at 4348.797 kb on + strand at 4348.868 kb on + strand at 4348.871 kb on + strand at 4348.871 kb on + strand at 4348.959 kb on - strand at 4348.978 kb on + strand at 4349.053 kb on + strand at 4349.102 kb on + strand at 4349.108 kb on + strand at 4349.108 kb on + strand at 4349.187 kb on + strand at 4349.202 kb on - strand at 4349.284 kb on - strand at 4349.324 kb on - strand, within CA265_RS17440 at 4349.325 kb on + strand, within CA265_RS17440 at 4349.325 kb on + strand, within CA265_RS17440 at 4349.421 kb on + strand, within CA265_RS17440 at 4349.421 kb on + strand, within CA265_RS17440 at 4349.421 kb on + strand, within CA265_RS17440 at 4349.421 kb on + strand, within CA265_RS17440 at 4349.427 kb on + strand, within CA265_RS17440 at 4349.428 kb on - strand, within CA265_RS17440 at 4349.490 kb on + strand, within CA265_RS17440 at 4349.490 kb on + strand, within CA265_RS17440 at 4349.491 kb on - strand, within CA265_RS17440 at 4349.527 kb on - strand, within CA265_RS17440 at 4349.636 kb on + strand, within CA265_RS17440 at 4349.655 kb on - strand, within CA265_RS17440 at 4349.655 kb on - strand, within CA265_RS17440 at 4349.727 kb on + strand, within CA265_RS17440 at 4349.736 kb on + strand, within CA265_RS17440 at 4349.770 kb on - strand, within CA265_RS17440 at 4349.822 kb on + strand, within CA265_RS17440 at 4349.893 kb on + strand, within CA265_RS17440 at 4349.893 kb on + strand, within CA265_RS17440 at 4349.973 kb on - strand, within CA265_RS17440 at 4349.994 kb on + strand, within CA265_RS17440 at 4349.998 kb on + strand, within CA265_RS17440 at 4350.059 kb on + strand, within CA265_RS17440 at 4350.060 kb on - strand, within CA265_RS17440 at 4350.060 kb on - strand, within CA265_RS17440 at 4350.120 kb on + strand, within CA265_RS17440 at 4350.120 kb on + strand, within CA265_RS17440 at 4350.123 kb on + strand, within CA265_RS17440 at 4350.141 kb on + strand, within CA265_RS17440 at 4350.160 kb on - strand, within CA265_RS17440 at 4350.265 kb on - strand, within CA265_RS17440 at 4350.399 kb on + strand, within CA265_RS17440 at 4350.413 kb on - strand, within CA265_RS17440 at 4350.413 kb on - strand, within CA265_RS17440 at 4350.413 kb on - strand, within CA265_RS17440 at 4350.476 kb on - strand, within CA265_RS17440 at 4350.543 kb on + strand, within CA265_RS17440 at 4350.544 kb on - strand, within CA265_RS17440 at 4350.598 kb on - strand, within CA265_RS17440 at 4350.642 kb on + strand, within CA265_RS17440 at 4350.643 kb on - strand, within CA265_RS17440 at 4350.700 kb on - strand, within CA265_RS17440 at 4350.756 kb on - strand, within CA265_RS17440 at 4350.786 kb on + strand, within CA265_RS17440 at 4350.786 kb on + strand, within CA265_RS17440 at 4350.787 kb on - strand, within CA265_RS17440 at 4350.793 kb on - strand, within CA265_RS17440 at 4350.873 kb on + strand, within CA265_RS17440 at 4350.873 kb on + strand, within CA265_RS17440 at 4351.092 kb on - strand at 4351.095 kb on - strand at 4351.095 kb on - strand at 4351.100 kb on + strand at 4351.101 kb on - strand at 4351.107 kb on - strand at 4351.200 kb on - strand at 4351.267 kb on - strand at 4351.308 kb on + strand at 4351.309 kb on - strand at 4351.311 kb on - strand at 4351.315 kb on - strand at 4351.335 kb on + strand at 4351.440 kb on - strand, within CA265_RS17445 at 4351.452 kb on + strand, within CA265_RS17445 at 4351.452 kb on + strand, within CA265_RS17445 at 4351.470 kb on - strand, within CA265_RS17445 at 4351.483 kb on - strand, within CA265_RS17445 at 4351.511 kb on - strand, within CA265_RS17445 at 4351.590 kb on - strand, within CA265_RS17445 at 4351.649 kb on + strand, within CA265_RS17445 at 4351.719 kb on - strand, within CA265_RS17445 at 4351.735 kb on + strand, within CA265_RS17445 at 4351.788 kb on + strand at 4351.882 kb on + strand at 4351.910 kb on - strand at 4351.922 kb on - strand at 4351.922 kb on - strand at 4351.922 kb on - strand at 4351.942 kb on + strand at 4351.943 kb on - strand at 4351.943 kb on - strand at 4351.964 kb on + strand at 4352.091 kb on - strand at 4352.117 kb on - strand at 4352.199 kb on - strand, within CA265_RS17450 at 4352.201 kb on - strand, within CA265_RS17450
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol 10mM (C) remove 4,348,106 + -1.2 4,348,125 - CA265_RS17435 0.11 +0.6 4,348,129 + CA265_RS17435 0.11 +0.3 4,348,167 - CA265_RS17435 0.17 -0.3 4,348,192 + CA265_RS17435 0.20 -0.5 4,348,207 + CA265_RS17435 0.22 -0.7 4,348,249 + CA265_RS17435 0.28 -0.1 4,348,472 + CA265_RS17435 0.59 -1.1 4,348,496 - CA265_RS17435 0.62 -0.8 4,348,496 - CA265_RS17435 0.62 +0.4 4,348,588 - CA265_RS17435 0.75 -1.8 4,348,671 + CA265_RS17435 0.86 -0.2 4,348,671 + CA265_RS17435 0.86 -0.1 4,348,729 - -0.1 4,348,729 - +2.1 4,348,797 + -0.7 4,348,797 + -1.8 4,348,868 + -0.9 4,348,871 + -0.0 4,348,871 + -1.9 4,348,959 - +0.9 4,348,978 + +0.8 4,349,053 + +2.5 4,349,102 + +1.8 4,349,108 + +1.1 4,349,108 + +3.4 4,349,187 + +1.1 4,349,202 - +0.7 4,349,284 - +1.4 4,349,324 - CA265_RS17440 0.11 +0.2 4,349,325 + CA265_RS17440 0.11 +0.1 4,349,325 + CA265_RS17440 0.11 +0.8 4,349,421 + CA265_RS17440 0.15 -0.8 4,349,421 + CA265_RS17440 0.15 +0.5 4,349,421 + CA265_RS17440 0.15 -0.1 4,349,421 + CA265_RS17440 0.15 +0.6 4,349,427 + CA265_RS17440 0.15 +1.4 4,349,428 - CA265_RS17440 0.15 +1.7 4,349,490 + CA265_RS17440 0.18 -0.7 4,349,490 + CA265_RS17440 0.18 +1.5 4,349,491 - CA265_RS17440 0.18 +0.7 4,349,527 - CA265_RS17440 0.20 +1.7 4,349,636 + CA265_RS17440 0.25 +0.4 4,349,655 - CA265_RS17440 0.26 -1.6 4,349,655 - CA265_RS17440 0.26 +0.2 4,349,727 + CA265_RS17440 0.29 +2.0 4,349,736 + CA265_RS17440 0.30 -2.8 4,349,770 - CA265_RS17440 0.31 +2.7 4,349,822 + CA265_RS17440 0.34 +1.6 4,349,893 + CA265_RS17440 0.37 +0.2 4,349,893 + CA265_RS17440 0.37 +1.3 4,349,973 - CA265_RS17440 0.41 +0.0 4,349,994 + CA265_RS17440 0.42 +0.9 4,349,998 + CA265_RS17440 0.42 +0.3 4,350,059 + CA265_RS17440 0.45 +0.9 4,350,060 - CA265_RS17440 0.45 +0.6 4,350,060 - CA265_RS17440 0.45 +0.7 4,350,120 + CA265_RS17440 0.48 +0.9 4,350,120 + CA265_RS17440 0.48 -1.1 4,350,123 + CA265_RS17440 0.48 +0.7 4,350,141 + CA265_RS17440 0.49 +0.9 4,350,160 - CA265_RS17440 0.50 +0.8 4,350,265 - CA265_RS17440 0.54 +0.9 4,350,399 + CA265_RS17440 0.61 -0.4 4,350,413 - CA265_RS17440 0.61 +0.7 4,350,413 - CA265_RS17440 0.61 +0.8 4,350,413 - CA265_RS17440 0.61 +0.7 4,350,476 - CA265_RS17440 0.64 +0.9 4,350,543 + CA265_RS17440 0.67 +0.5 4,350,544 - CA265_RS17440 0.67 +1.7 4,350,598 - CA265_RS17440 0.70 +1.2 4,350,642 + CA265_RS17440 0.72 +1.5 4,350,643 - CA265_RS17440 0.72 +1.1 4,350,700 - CA265_RS17440 0.75 +0.5 4,350,756 - CA265_RS17440 0.77 +1.1 4,350,786 + CA265_RS17440 0.79 -2.0 4,350,786 + CA265_RS17440 0.79 +1.3 4,350,787 - CA265_RS17440 0.79 +1.1 4,350,793 - CA265_RS17440 0.79 +0.8 4,350,873 + CA265_RS17440 0.83 +0.5 4,350,873 + CA265_RS17440 0.83 +2.1 4,351,092 - +0.2 4,351,095 - +0.2 4,351,095 - +1.8 4,351,100 + -0.1 4,351,101 - +0.7 4,351,107 - +0.5 4,351,200 - +0.4 4,351,267 - -1.2 4,351,308 + +0.6 4,351,309 - -0.7 4,351,311 - +1.1 4,351,315 - +0.1 4,351,335 + +0.4 4,351,440 - CA265_RS17445 0.19 +0.5 4,351,452 + CA265_RS17445 0.21 +0.9 4,351,452 + CA265_RS17445 0.21 -0.4 4,351,470 - CA265_RS17445 0.24 +0.0 4,351,483 - CA265_RS17445 0.26 +0.2 4,351,511 - CA265_RS17445 0.30 +0.4 4,351,590 - CA265_RS17445 0.44 -1.4 4,351,649 + CA265_RS17445 0.54 -2.0 4,351,719 - CA265_RS17445 0.65 -3.3 4,351,735 + CA265_RS17445 0.68 -0.5 4,351,788 + +0.3 4,351,882 + +0.5 4,351,910 - -0.3 4,351,922 - -0.2 4,351,922 - -0.0 4,351,922 - +0.4 4,351,942 + -0.0 4,351,943 - -0.7 4,351,943 - +0.0 4,351,964 + +1.9 4,352,091 - +2.1 4,352,117 - +3.4 4,352,199 - CA265_RS17450 0.13 +0.4 4,352,201 - CA265_RS17450 0.13 -2.0
Or see this region's nucleotide sequence