Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01440

Experiment: Lactitol 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01435 and CA265_RS01440 are separated by 29 nucleotidesCA265_RS01440 and CA265_RS01445 are separated by 402 nucleotides CA265_RS01435: CA265_RS01435 - hypothetical protein, at 362,564 to 365,686 _RS01435 CA265_RS01440: CA265_RS01440 - hypothetical protein, at 365,716 to 366,900 _RS01440 CA265_RS01445: CA265_RS01445 - hypothetical protein, at 367,303 to 368,619 _RS01445 Position (kb) 365 366 367Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 364.725 kb on + strand, within CA265_RS01435at 364.730 kb on + strand, within CA265_RS01435at 364.775 kb on + strand, within CA265_RS01435at 364.775 kb on + strand, within CA265_RS01435at 364.775 kb on + strand, within CA265_RS01435at 364.776 kb on - strand, within CA265_RS01435at 364.811 kb on - strand, within CA265_RS01435at 364.849 kb on - strand, within CA265_RS01435at 364.866 kb on + strand, within CA265_RS01435at 364.892 kb on + strand, within CA265_RS01435at 364.900 kb on + strand, within CA265_RS01435at 364.900 kb on + strand, within CA265_RS01435at 364.912 kb on + strand, within CA265_RS01435at 364.913 kb on - strand, within CA265_RS01435at 364.913 kb on - strand, within CA265_RS01435at 364.913 kb on - strand, within CA265_RS01435at 364.961 kb on + strand, within CA265_RS01435at 365.017 kb on + strand, within CA265_RS01435at 365.102 kb on - strand, within CA265_RS01435at 365.103 kb on + strand, within CA265_RS01435at 365.103 kb on + strand, within CA265_RS01435at 365.175 kb on - strand, within CA265_RS01435at 365.204 kb on - strand, within CA265_RS01435at 365.256 kb on - strand, within CA265_RS01435at 365.257 kb on + strand, within CA265_RS01435at 365.257 kb on + strand, within CA265_RS01435at 365.257 kb on + strand, within CA265_RS01435at 365.258 kb on - strand, within CA265_RS01435at 365.323 kb on + strandat 365.323 kb on + strand, within CA265_RS01435at 365.386 kb on + strandat 365.412 kb on - strandat 365.483 kb on + strandat 365.527 kb on + strandat 365.528 kb on - strandat 365.606 kb on - strandat 365.606 kb on - strandat 365.661 kb on - strandat 365.661 kb on - strandat 365.672 kb on - strandat 365.732 kb on - strandat 365.781 kb on - strandat 365.860 kb on + strand, within CA265_RS01440at 365.892 kb on + strand, within CA265_RS01440at 365.958 kb on + strand, within CA265_RS01440at 365.978 kb on + strand, within CA265_RS01440at 365.991 kb on + strand, within CA265_RS01440at 366.079 kb on + strand, within CA265_RS01440at 366.239 kb on + strand, within CA265_RS01440at 366.284 kb on + strand, within CA265_RS01440at 366.284 kb on + strand, within CA265_RS01440at 366.332 kb on + strand, within CA265_RS01440at 366.332 kb on + strand, within CA265_RS01440at 366.355 kb on - strand, within CA265_RS01440at 366.355 kb on - strand, within CA265_RS01440at 366.405 kb on - strand, within CA265_RS01440at 366.442 kb on - strand, within CA265_RS01440at 366.463 kb on - strand, within CA265_RS01440at 366.566 kb on + strand, within CA265_RS01440at 366.592 kb on + strand, within CA265_RS01440at 366.592 kb on + strand, within CA265_RS01440at 366.593 kb on - strand, within CA265_RS01440at 366.599 kb on + strand, within CA265_RS01440at 366.609 kb on - strand, within CA265_RS01440at 366.642 kb on + strand, within CA265_RS01440at 366.645 kb on + strand, within CA265_RS01440at 366.646 kb on - strand, within CA265_RS01440at 366.646 kb on - strand, within CA265_RS01440at 366.690 kb on + strand, within CA265_RS01440at 366.859 kb on - strandat 366.944 kb on + strandat 367.093 kb on + strandat 367.125 kb on - strandat 367.138 kb on - strandat 367.138 kb on - strandat 367.138 kb on - strandat 367.141 kb on + strandat 367.379 kb on - strandat 367.442 kb on + strand, within CA265_RS01445at 367.445 kb on - strand, within CA265_RS01445at 367.477 kb on - strand, within CA265_RS01445at 367.574 kb on - strand, within CA265_RS01445at 367.588 kb on - strand, within CA265_RS01445at 367.624 kb on + strand, within CA265_RS01445at 367.625 kb on - strand, within CA265_RS01445at 367.625 kb on - strand, within CA265_RS01445at 367.629 kb on - strand, within CA265_RS01445at 367.631 kb on - strand, within CA265_RS01445at 367.632 kb on + strand, within CA265_RS01445at 367.632 kb on + strand, within CA265_RS01445at 367.633 kb on - strand, within CA265_RS01445at 367.714 kb on - strand, within CA265_RS01445at 367.736 kb on + strand, within CA265_RS01445at 367.736 kb on + strand, within CA265_RS01445at 367.737 kb on - strand, within CA265_RS01445at 367.737 kb on - strand, within CA265_RS01445at 367.745 kb on + strand, within CA265_RS01445at 367.745 kb on + strand, within CA265_RS01445at 367.745 kb on + strand, within CA265_RS01445at 367.854 kb on + strand, within CA265_RS01445at 367.865 kb on - strand, within CA265_RS01445

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol 10mM (C)
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364,725 + CA265_RS01435 0.69 -0.0
364,730 + CA265_RS01435 0.69 -0.3
364,775 + CA265_RS01435 0.71 +0.4
364,775 + CA265_RS01435 0.71 -0.0
364,775 + CA265_RS01435 0.71 +0.8
364,776 - CA265_RS01435 0.71 -1.6
364,811 - CA265_RS01435 0.72 -0.7
364,849 - CA265_RS01435 0.73 +0.6
364,866 + CA265_RS01435 0.74 -1.8
364,892 + CA265_RS01435 0.75 -0.2
364,900 + CA265_RS01435 0.75 -1.8
364,900 + CA265_RS01435 0.75 -0.9
364,912 + CA265_RS01435 0.75 +1.7
364,913 - CA265_RS01435 0.75 -2.3
364,913 - CA265_RS01435 0.75 -0.4
364,913 - CA265_RS01435 0.75 -0.9
364,961 + CA265_RS01435 0.77 -0.1
365,017 + CA265_RS01435 0.79 -1.1
365,102 - CA265_RS01435 0.81 -0.5
365,103 + CA265_RS01435 0.81 +0.0
365,103 + CA265_RS01435 0.81 +0.6
365,175 - CA265_RS01435 0.84 +0.8
365,204 - CA265_RS01435 0.85 -0.5
365,256 - CA265_RS01435 0.86 +0.1
365,257 + CA265_RS01435 0.86 +0.3
365,257 + CA265_RS01435 0.86 +0.7
365,257 + CA265_RS01435 0.86 +0.4
365,258 - CA265_RS01435 0.86 -0.0
365,323 + -1.0
365,323 + CA265_RS01435 0.88 -0.8
365,386 + -0.2
365,412 - -0.2
365,483 + +0.6
365,527 + -1.7
365,528 - -0.7
365,606 - -1.9
365,606 - -0.5
365,661 - -3.6
365,661 - +1.1
365,672 - +2.1
365,732 - +1.2
365,781 - -0.5
365,860 + CA265_RS01440 0.12 -0.4
365,892 + CA265_RS01440 0.15 +0.4
365,958 + CA265_RS01440 0.20 +0.9
365,978 + CA265_RS01440 0.22 -3.6
365,991 + CA265_RS01440 0.23 +1.3
366,079 + CA265_RS01440 0.31 +0.8
366,239 + CA265_RS01440 0.44 +0.0
366,284 + CA265_RS01440 0.48 +2.1
366,284 + CA265_RS01440 0.48 -0.6
366,332 + CA265_RS01440 0.52 +1.4
366,332 + CA265_RS01440 0.52 +0.3
366,355 - CA265_RS01440 0.54 -1.2
366,355 - CA265_RS01440 0.54 -0.4
366,405 - CA265_RS01440 0.58 +0.1
366,442 - CA265_RS01440 0.61 -0.9
366,463 - CA265_RS01440 0.63 -0.9
366,566 + CA265_RS01440 0.72 -3.0
366,592 + CA265_RS01440 0.74 +1.8
366,592 + CA265_RS01440 0.74 +1.3
366,593 - CA265_RS01440 0.74 -1.1
366,599 + CA265_RS01440 0.75 -0.2
366,609 - CA265_RS01440 0.75 -0.8
366,642 + CA265_RS01440 0.78 +0.4
366,645 + CA265_RS01440 0.78 -0.1
366,646 - CA265_RS01440 0.78 +0.4
366,646 - CA265_RS01440 0.78 +0.1
366,690 + CA265_RS01440 0.82 -1.4
366,859 - +0.0
366,944 + -0.1
367,093 + -0.6
367,125 - +0.5
367,138 - -0.2
367,138 - +1.7
367,138 - +0.0
367,141 + -0.4
367,379 - +1.4
367,442 + CA265_RS01445 0.11 +0.1
367,445 - CA265_RS01445 0.11 -0.1
367,477 - CA265_RS01445 0.13 -0.5
367,574 - CA265_RS01445 0.21 -0.1
367,588 - CA265_RS01445 0.22 -0.3
367,624 + CA265_RS01445 0.24 -0.9
367,625 - CA265_RS01445 0.24 -0.5
367,625 - CA265_RS01445 0.24 -0.4
367,629 - CA265_RS01445 0.25 -3.3
367,631 - CA265_RS01445 0.25 -1.1
367,632 + CA265_RS01445 0.25 -0.1
367,632 + CA265_RS01445 0.25 +1.2
367,633 - CA265_RS01445 0.25 +0.0
367,714 - CA265_RS01445 0.31 -0.4
367,736 + CA265_RS01445 0.33 -1.7
367,736 + CA265_RS01445 0.33 -0.6
367,737 - CA265_RS01445 0.33 -0.7
367,737 - CA265_RS01445 0.33 +0.3
367,745 + CA265_RS01445 0.34 -1.0
367,745 + CA265_RS01445 0.34 +0.7
367,745 + CA265_RS01445 0.34 -0.6
367,854 + CA265_RS01445 0.42 -0.6
367,865 - CA265_RS01445 0.43 +0.2

Or see this region's nucleotide sequence