Experiment: Lactitol 10mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00155 and CA265_RS00160 are separated by 710 nucleotides CA265_RS00160 and CA265_RS00165 are separated by 157 nucleotides
CA265_RS00155: CA265_RS00155 - hypothetical protein, at 35,523 to 37,931
_RS00155
CA265_RS00160: CA265_RS00160 - hypothetical protein, at 38,642 to 39,238
_RS00160
CA265_RS00165: CA265_RS00165 - hypothetical protein, at 39,396 to 40,388
_RS00165
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 37.705 kb on + strand at 37.805 kb on + strand at 37.819 kb on + strand at 37.843 kb on - strand at 37.845 kb on - strand at 37.950 kb on + strand at 37.990 kb on + strand at 37.991 kb on - strand at 38.011 kb on - strand at 38.028 kb on - strand at 38.039 kb on + strand at 38.057 kb on + strand at 38.090 kb on - strand at 38.125 kb on - strand at 38.125 kb on - strand at 38.125 kb on - strand at 38.146 kb on + strand at 38.226 kb on - strand at 38.228 kb on - strand at 38.250 kb on - strand at 38.265 kb on - strand at 38.268 kb on + strand at 38.269 kb on - strand at 38.351 kb on - strand at 38.459 kb on + strand at 38.459 kb on + strand at 38.459 kb on + strand at 38.536 kb on - strand at 38.633 kb on + strand at 38.634 kb on - strand at 38.636 kb on + strand at 38.636 kb on + strand at 38.676 kb on + strand at 38.688 kb on + strand at 38.867 kb on + strand, within CA265_RS00160 at 38.880 kb on + strand, within CA265_RS00160 at 38.880 kb on + strand, within CA265_RS00160 at 38.880 kb on + strand, within CA265_RS00160 at 38.881 kb on - strand, within CA265_RS00160 at 38.881 kb on - strand, within CA265_RS00160 at 38.899 kb on - strand, within CA265_RS00160 at 39.077 kb on - strand, within CA265_RS00160 at 39.181 kb on - strand at 39.181 kb on - strand at 39.184 kb on + strand at 39.366 kb on + strand at 39.432 kb on + strand at 39.433 kb on - strand at 39.443 kb on + strand at 39.477 kb on - strand at 39.541 kb on + strand, within CA265_RS00165 at 39.732 kb on - strand, within CA265_RS00165 at 39.737 kb on - strand, within CA265_RS00165 at 39.746 kb on + strand, within CA265_RS00165 at 39.955 kb on + strand, within CA265_RS00165 at 40.024 kb on + strand, within CA265_RS00165 at 40.025 kb on - strand, within CA265_RS00165 at 40.051 kb on + strand, within CA265_RS00165 at 40.061 kb on + strand, within CA265_RS00165 at 40.062 kb on - strand, within CA265_RS00165 at 40.190 kb on + strand, within CA265_RS00165
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol 10mM (C) remove 37,705 + -1.1 37,805 + +0.1 37,819 + -2.6 37,843 - -0.8 37,845 - -1.7 37,950 + +1.5 37,990 + -0.8 37,991 - -0.4 38,011 - +1.4 38,028 - -2.7 38,039 + -0.8 38,057 + -0.1 38,090 - +0.5 38,125 - +2.1 38,125 - -1.6 38,125 - -0.7 38,146 + +0.4 38,226 - +0.6 38,228 - -0.9 38,250 - -1.0 38,265 - -0.7 38,268 + -0.2 38,269 - -1.1 38,351 - +0.3 38,459 + -0.0 38,459 + +0.5 38,459 + +0.8 38,536 - -0.2 38,633 + -0.5 38,634 - -3.0 38,636 + +0.7 38,636 + +0.2 38,676 + -0.1 38,688 + -2.0 38,867 + CA265_RS00160 0.38 +0.5 38,880 + CA265_RS00160 0.40 +1.7 38,880 + CA265_RS00160 0.40 -0.1 38,880 + CA265_RS00160 0.40 +1.6 38,881 - CA265_RS00160 0.40 +1.1 38,881 - CA265_RS00160 0.40 -0.3 38,899 - CA265_RS00160 0.43 +1.4 39,077 - CA265_RS00160 0.73 -0.6 39,181 - +0.8 39,181 - -1.0 39,184 + -0.0 39,366 + +0.9 39,432 + +0.3 39,433 - +0.1 39,443 + -1.3 39,477 - +0.2 39,541 + CA265_RS00165 0.15 -1.5 39,732 - CA265_RS00165 0.34 -0.0 39,737 - CA265_RS00165 0.34 +0.3 39,746 + CA265_RS00165 0.35 +0.8 39,955 + CA265_RS00165 0.56 -2.9 40,024 + CA265_RS00165 0.63 -2.9 40,025 - CA265_RS00165 0.63 +1.4 40,051 + CA265_RS00165 0.66 -0.2 40,061 + CA265_RS00165 0.67 +1.3 40,062 - CA265_RS00165 0.67 -1.1 40,190 + CA265_RS00165 0.80 +0.7
Or see this region's nucleotide sequence