Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS32200 and AZOBR_RS32205 are separated by 125 nucleotides AZOBR_RS32205 and AZOBR_RS32210 overlap by 4 nucleotides AZOBR_RS32210 and AZOBR_RS32215 are separated by 304 nucleotides AZOBR_RS32215 and AZOBR_RS32220 are separated by 22 nucleotides
AZOBR_RS32200: AZOBR_RS32200 - glycerol-3-phosphate dehydrogenase subunit C, at 590,221 to 590,493
_RS32200
AZOBR_RS32205: AZOBR_RS32205 - hypothetical protein, at 590,619 to 590,852
_RS32205
AZOBR_RS32210: AZOBR_RS32210 - hypothetical protein, at 590,849 to 591,100
_RS32210
AZOBR_RS32215: AZOBR_RS32215 - hypothetical protein, at 591,405 to 591,755
_RS32215
AZOBR_RS32220: AZOBR_RS32220 - hypothetical protein, at 591,778 to 592,857
_RS32220
Position (kb) 591
592 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 590.491 kb on + strand at 590.491 kb on + strand at 590.492 kb on - strand at 590.566 kb on - strand at 590.566 kb on - strand at 590.715 kb on + strand, within AZOBR_RS32205 at 590.715 kb on + strand, within AZOBR_RS32205 at 590.715 kb on + strand, within AZOBR_RS32205 at 590.715 kb on + strand, within AZOBR_RS32205 at 590.715 kb on + strand, within AZOBR_RS32205 at 590.715 kb on + strand, within AZOBR_RS32205 at 590.716 kb on - strand, within AZOBR_RS32205 at 590.716 kb on - strand, within AZOBR_RS32205 at 590.716 kb on - strand, within AZOBR_RS32205 at 591.449 kb on - strand, within AZOBR_RS32215 at 591.449 kb on - strand, within AZOBR_RS32215 at 591.489 kb on - strand, within AZOBR_RS32215 at 591.513 kb on + strand, within AZOBR_RS32215 at 591.513 kb on + strand, within AZOBR_RS32215 at 591.513 kb on + strand, within AZOBR_RS32215 at 591.514 kb on - strand, within AZOBR_RS32215 at 591.514 kb on - strand, within AZOBR_RS32215 at 591.645 kb on + strand, within AZOBR_RS32215 at 591.645 kb on + strand, within AZOBR_RS32215 at 591.645 kb on + strand, within AZOBR_RS32215 at 591.646 kb on - strand, within AZOBR_RS32215 at 591.646 kb on - strand, within AZOBR_RS32215 at 591.646 kb on - strand, within AZOBR_RS32215 at 591.646 kb on - strand, within AZOBR_RS32215 at 591.646 kb on - strand, within AZOBR_RS32215 at 591.737 kb on + strand at 591.737 kb on + strand at 591.737 kb on + strand at 591.910 kb on + strand, within AZOBR_RS32220 at 591.911 kb on - strand, within AZOBR_RS32220 at 591.911 kb on - strand, within AZOBR_RS32220 at 592.247 kb on - strand, within AZOBR_RS32220 at 592.247 kb on - strand, within AZOBR_RS32220 at 592.345 kb on + strand, within AZOBR_RS32220 at 592.345 kb on + strand, within AZOBR_RS32220 at 592.346 kb on - strand, within AZOBR_RS32220 at 592.346 kb on - strand, within AZOBR_RS32220 at 592.348 kb on + strand, within AZOBR_RS32220 at 592.358 kb on - strand, within AZOBR_RS32220 at 592.366 kb on + strand, within AZOBR_RS32220 at 592.367 kb on - strand, within AZOBR_RS32220
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 590,491 + -1.0 590,491 + +0.4 590,492 - +0.3 590,566 - -1.6 590,566 - -0.2 590,715 + AZOBR_RS32205 0.41 +0.4 590,715 + AZOBR_RS32205 0.41 -0.8 590,715 + AZOBR_RS32205 0.41 -1.0 590,715 + AZOBR_RS32205 0.41 -1.6 590,715 + AZOBR_RS32205 0.41 -0.9 590,715 + AZOBR_RS32205 0.41 +1.3 590,716 - AZOBR_RS32205 0.41 -0.1 590,716 - AZOBR_RS32205 0.41 -0.8 590,716 - AZOBR_RS32205 0.41 -3.3 591,449 - AZOBR_RS32215 0.13 +0.2 591,449 - AZOBR_RS32215 0.13 +2.2 591,489 - AZOBR_RS32215 0.24 +0.1 591,513 + AZOBR_RS32215 0.31 -0.7 591,513 + AZOBR_RS32215 0.31 -0.6 591,513 + AZOBR_RS32215 0.31 -1.5 591,514 - AZOBR_RS32215 0.31 +0.7 591,514 - AZOBR_RS32215 0.31 -0.8 591,645 + AZOBR_RS32215 0.68 +0.4 591,645 + AZOBR_RS32215 0.68 -1.0 591,645 + AZOBR_RS32215 0.68 +0.2 591,646 - AZOBR_RS32215 0.69 -0.5 591,646 - AZOBR_RS32215 0.69 -1.0 591,646 - AZOBR_RS32215 0.69 -0.1 591,646 - AZOBR_RS32215 0.69 -0.5 591,646 - AZOBR_RS32215 0.69 -0.7 591,737 + -1.4 591,737 + +0.7 591,737 + -0.1 591,910 + AZOBR_RS32220 0.12 -0.9 591,911 - AZOBR_RS32220 0.12 -1.5 591,911 - AZOBR_RS32220 0.12 -2.6 592,247 - AZOBR_RS32220 0.43 -0.2 592,247 - AZOBR_RS32220 0.43 -1.1 592,345 + AZOBR_RS32220 0.53 -0.2 592,345 + AZOBR_RS32220 0.53 +0.6 592,346 - AZOBR_RS32220 0.53 +0.2 592,346 - AZOBR_RS32220 0.53 +0.6 592,348 + AZOBR_RS32220 0.53 -0.2 592,358 - AZOBR_RS32220 0.54 +0.4 592,366 + AZOBR_RS32220 0.54 -0.2 592,367 - AZOBR_RS32220 0.55 -0.6
Or see this region's nucleotide sequence