Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30530

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS30525 and AZOBR_RS30530 are separated by 281 nucleotides AZOBR_RS30525: AZOBR_RS30525 - hypothetical protein, at 196,032 to 197,018 _RS30525 AZOBR_RS30530: AZOBR_RS30530 - peptidase M23, at 197,300 to 198,643 _RS30530 Position (kb) 197 198 199Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 196.791 kb on + strand, within AZOBR_RS30525at 196.791 kb on + strand, within AZOBR_RS30525at 196.815 kb on + strand, within AZOBR_RS30525at 196.816 kb on - strand, within AZOBR_RS30525at 196.816 kb on - strand, within AZOBR_RS30525at 196.816 kb on - strand, within AZOBR_RS30525at 197.112 kb on + strandat 197.112 kb on + strandat 197.112 kb on + strandat 197.270 kb on - strandat 197.270 kb on - strandat 197.270 kb on - strandat 197.508 kb on + strand, within AZOBR_RS30530at 197.509 kb on - strand, within AZOBR_RS30530at 197.509 kb on - strand, within AZOBR_RS30530at 197.509 kb on - strand, within AZOBR_RS30530at 197.551 kb on - strand, within AZOBR_RS30530at 197.551 kb on - strand, within AZOBR_RS30530at 197.551 kb on - strand, within AZOBR_RS30530at 197.622 kb on + strand, within AZOBR_RS30530at 197.661 kb on + strand, within AZOBR_RS30530at 197.661 kb on + strand, within AZOBR_RS30530at 197.661 kb on + strand, within AZOBR_RS30530at 197.662 kb on - strand, within AZOBR_RS30530at 197.662 kb on - strand, within AZOBR_RS30530at 197.671 kb on - strand, within AZOBR_RS30530at 197.877 kb on + strand, within AZOBR_RS30530at 197.878 kb on - strand, within AZOBR_RS30530at 197.878 kb on - strand, within AZOBR_RS30530at 197.878 kb on - strand, within AZOBR_RS30530at 197.914 kb on - strand, within AZOBR_RS30530at 197.914 kb on - strand, within AZOBR_RS30530at 197.923 kb on - strand, within AZOBR_RS30530at 198.007 kb on - strand, within AZOBR_RS30530at 198.007 kb on - strand, within AZOBR_RS30530at 198.060 kb on + strand, within AZOBR_RS30530at 198.060 kb on + strand, within AZOBR_RS30530at 198.060 kb on + strand, within AZOBR_RS30530at 198.061 kb on - strand, within AZOBR_RS30530at 198.066 kb on + strand, within AZOBR_RS30530at 198.067 kb on - strand, within AZOBR_RS30530at 198.067 kb on - strand, within AZOBR_RS30530at 198.067 kb on - strand, within AZOBR_RS30530at 198.345 kb on + strand, within AZOBR_RS30530at 198.346 kb on - strand, within AZOBR_RS30530at 198.412 kb on + strand, within AZOBR_RS30530at 198.412 kb on + strand, within AZOBR_RS30530at 198.552 kb on + strandat 198.655 kb on + strandat 198.655 kb on + strandat 198.655 kb on + strandat 198.656 kb on - strandat 198.656 kb on - strandat 198.656 kb on - strandat 198.656 kb on - strandat 198.868 kb on + strandat 198.868 kb on + strandat 198.868 kb on + strandat 198.868 kb on + strandat 198.868 kb on + strandat 198.868 kb on + strandat 198.868 kb on + strandat 198.868 kb on + strandat 198.868 kb on + strandat 198.869 kb on - strandat 198.869 kb on - strandat 198.869 kb on - strandat 198.869 kb on - strandat 198.869 kb on - strandat 198.869 kb on - strandat 198.869 kb on - strandat 198.869 kb on - strandat 198.890 kb on - strandat 198.897 kb on + strandat 198.897 kb on + strandat 198.897 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
196,791 + AZOBR_RS30525 0.77 +0.5
196,791 + AZOBR_RS30525 0.77 -0.2
196,815 + AZOBR_RS30525 0.79 +0.2
196,816 - AZOBR_RS30525 0.79 +0.9
196,816 - AZOBR_RS30525 0.79 -0.1
196,816 - AZOBR_RS30525 0.79 +2.1
197,112 + -0.7
197,112 + +0.7
197,112 + -0.1
197,270 - -0.2
197,270 - -0.1
197,270 - +0.6
197,508 + AZOBR_RS30530 0.15 +1.5
197,509 - AZOBR_RS30530 0.16 +0.4
197,509 - AZOBR_RS30530 0.16 +1.8
197,509 - AZOBR_RS30530 0.16 +1.6
197,551 - AZOBR_RS30530 0.19 -0.4
197,551 - AZOBR_RS30530 0.19 +0.2
197,551 - AZOBR_RS30530 0.19 -1.1
197,622 + AZOBR_RS30530 0.24 +0.8
197,661 + AZOBR_RS30530 0.27 -0.6
197,661 + AZOBR_RS30530 0.27 -1.8
197,661 + AZOBR_RS30530 0.27 -0.0
197,662 - AZOBR_RS30530 0.27 +1.8
197,662 - AZOBR_RS30530 0.27 +0.9
197,671 - AZOBR_RS30530 0.28 +0.7
197,877 + AZOBR_RS30530 0.43 -1.6
197,878 - AZOBR_RS30530 0.43 +0.3
197,878 - AZOBR_RS30530 0.43 +2.8
197,878 - AZOBR_RS30530 0.43 +1.4
197,914 - AZOBR_RS30530 0.46 +0.7
197,914 - AZOBR_RS30530 0.46 +0.4
197,923 - AZOBR_RS30530 0.46 -0.7
198,007 - AZOBR_RS30530 0.53 +0.0
198,007 - AZOBR_RS30530 0.53 +2.6
198,060 + AZOBR_RS30530 0.57 +1.7
198,060 + AZOBR_RS30530 0.57 +1.0
198,060 + AZOBR_RS30530 0.57 +1.0
198,061 - AZOBR_RS30530 0.57 +2.3
198,066 + AZOBR_RS30530 0.57 +1.0
198,067 - AZOBR_RS30530 0.57 +0.9
198,067 - AZOBR_RS30530 0.57 +2.0
198,067 - AZOBR_RS30530 0.57 +1.6
198,345 + AZOBR_RS30530 0.78 +0.8
198,346 - AZOBR_RS30530 0.78 +1.6
198,412 + AZOBR_RS30530 0.83 -0.1
198,412 + AZOBR_RS30530 0.83 +1.4
198,552 + +0.8
198,655 + +0.6
198,655 + -0.1
198,655 + +1.9
198,656 - -1.6
198,656 - +0.9
198,656 - -0.4
198,656 - +0.3
198,868 + -0.4
198,868 + -2.8
198,868 + -0.1
198,868 + +0.0
198,868 + -1.0
198,868 + +0.6
198,868 + -0.8
198,868 + -1.0
198,868 + -0.6
198,869 - -2.1
198,869 - -1.3
198,869 - -1.1
198,869 - +2.7
198,869 - -0.6
198,869 - +0.9
198,869 - -0.3
198,869 - +1.8
198,890 - -3.3
198,897 + +2.0
198,897 + +1.7
198,897 + +1.1

Or see this region's nucleotide sequence