Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29990 and AZOBR_RS29995 are separated by 28 nucleotides AZOBR_RS29995 and AZOBR_RS30000 are separated by 99 nucleotides AZOBR_RS30000 and AZOBR_RS30005 are separated by 147 nucleotides AZOBR_RS30005 and AZOBR_RS30010 are separated by 108 nucleotides
AZOBR_RS29990: AZOBR_RS29990 - putative dioxygenase subunit, at 69,499 to 70,425
_RS29990
AZOBR_RS29995: AZOBR_RS29995 - PAS sensor protein, at 70,454 to 70,879
_RS29995
AZOBR_RS30000: AZOBR_RS30000 - exported protein of unknown function, at 70,979 to 71,308
_RS30000
AZOBR_RS30005: AZOBR_RS30005 - membrane protein, at 71,456 to 71,629
_RS30005
AZOBR_RS30010: AZOBR_RS30010 - hypothetical protein, at 71,738 to 72,847
_RS30010
Position (kb) 70
71 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 69.458 kb on + strand at 69.459 kb on - strand at 69.459 kb on - strand at 69.514 kb on - strand at 69.514 kb on - strand at 69.638 kb on - strand, within AZOBR_RS29990 at 69.892 kb on + strand, within AZOBR_RS29990 at 69.892 kb on + strand, within AZOBR_RS29990 at 69.892 kb on + strand, within AZOBR_RS29990 at 69.893 kb on - strand, within AZOBR_RS29990 at 70.040 kb on - strand, within AZOBR_RS29990 at 70.658 kb on + strand, within AZOBR_RS29995 at 70.659 kb on - strand, within AZOBR_RS29995 at 70.659 kb on - strand, within AZOBR_RS29995 at 70.947 kb on + strand at 70.947 kb on + strand at 71.178 kb on - strand, within AZOBR_RS30000 at 71.180 kb on - strand, within AZOBR_RS30000 at 71.192 kb on + strand, within AZOBR_RS30000 at 71.408 kb on - strand at 71.799 kb on + strand at 71.800 kb on - strand at 71.800 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 69,458 + +0.6 69,459 - -2.0 69,459 - +0.7 69,514 - -0.5 69,514 - -0.2 69,638 - AZOBR_RS29990 0.15 +0.7 69,892 + AZOBR_RS29990 0.42 -3.0 69,892 + AZOBR_RS29990 0.42 -1.4 69,892 + AZOBR_RS29990 0.42 -1.2 69,893 - AZOBR_RS29990 0.43 -1.8 70,040 - AZOBR_RS29990 0.58 -0.3 70,658 + AZOBR_RS29995 0.48 -0.9 70,659 - AZOBR_RS29995 0.48 -1.1 70,659 - AZOBR_RS29995 0.48 +1.3 70,947 + -0.1 70,947 + +1.1 71,178 - AZOBR_RS30000 0.60 -0.7 71,180 - AZOBR_RS30000 0.61 +0.3 71,192 + AZOBR_RS30000 0.65 -0.1 71,408 - +0.5 71,799 + +1.0 71,800 - -0.3 71,800 - +0.0
Or see this region's nucleotide sequence