Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29835 and AZOBR_RS29840 are separated by 1 nucleotides AZOBR_RS29840 and AZOBR_RS29845 are separated by 287 nucleotides
AZOBR_RS29835: AZOBR_RS29835 - sulfite oxidase, at 41,202 to 41,843
_RS29835
AZOBR_RS29840: AZOBR_RS29840 - sulfoxide reductase catalytic subunit YedY, at 41,845 to 42,792
_RS29840
AZOBR_RS29845: AZOBR_RS29845 - oxidoreductase, at 43,080 to 44,108
_RS29845
Position (kb) 41
42
43 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 41.249 kb on + strand at 41.249 kb on + strand at 41.250 kb on - strand at 41.329 kb on + strand, within AZOBR_RS29835 at 41.329 kb on + strand, within AZOBR_RS29835 at 41.330 kb on - strand, within AZOBR_RS29835 at 41.330 kb on - strand, within AZOBR_RS29835 at 41.330 kb on - strand, within AZOBR_RS29835 at 41.330 kb on - strand, within AZOBR_RS29835 at 41.330 kb on - strand, within AZOBR_RS29835 at 41.476 kb on + strand, within AZOBR_RS29835 at 41.477 kb on - strand, within AZOBR_RS29835 at 41.539 kb on + strand, within AZOBR_RS29835 at 41.540 kb on - strand, within AZOBR_RS29835 at 41.540 kb on - strand, within AZOBR_RS29835 at 41.563 kb on + strand, within AZOBR_RS29835 at 41.563 kb on + strand, within AZOBR_RS29835 at 41.849 kb on + strand at 41.849 kb on + strand at 41.876 kb on + strand at 42.002 kb on + strand, within AZOBR_RS29840 at 42.002 kb on + strand, within AZOBR_RS29840 at 42.012 kb on - strand, within AZOBR_RS29840 at 42.102 kb on - strand, within AZOBR_RS29840 at 42.102 kb on - strand, within AZOBR_RS29840 at 42.161 kb on + strand, within AZOBR_RS29840 at 42.161 kb on + strand, within AZOBR_RS29840 at 42.161 kb on + strand, within AZOBR_RS29840 at 42.161 kb on + strand, within AZOBR_RS29840 at 42.161 kb on + strand, within AZOBR_RS29840 at 42.296 kb on + strand, within AZOBR_RS29840 at 42.296 kb on + strand, within AZOBR_RS29840 at 42.296 kb on + strand, within AZOBR_RS29840 at 42.297 kb on - strand, within AZOBR_RS29840 at 42.297 kb on - strand, within AZOBR_RS29840 at 42.297 kb on - strand, within AZOBR_RS29840 at 42.399 kb on - strand, within AZOBR_RS29840 at 42.848 kb on + strand at 42.848 kb on + strand at 42.849 kb on - strand at 42.849 kb on - strand at 43.072 kb on + strand at 43.072 kb on + strand at 43.072 kb on + strand at 43.072 kb on + strand at 43.073 kb on - strand at 43.073 kb on - strand at 43.546 kb on + strand, within AZOBR_RS29845 at 43.546 kb on + strand, within AZOBR_RS29845 at 43.547 kb on - strand, within AZOBR_RS29845 at 43.547 kb on - strand, within AZOBR_RS29845 at 43.547 kb on - strand, within AZOBR_RS29845 at 43.547 kb on - strand, within AZOBR_RS29845 at 43.627 kb on + strand, within AZOBR_RS29845 at 43.627 kb on + strand, within AZOBR_RS29845 at 43.628 kb on - strand, within AZOBR_RS29845 at 43.628 kb on - strand, within AZOBR_RS29845 at 43.630 kb on + strand, within AZOBR_RS29845 at 43.630 kb on + strand, within AZOBR_RS29845 at 43.631 kb on - strand, within AZOBR_RS29845 at 43.631 kb on - strand, within AZOBR_RS29845 at 43.631 kb on - strand, within AZOBR_RS29845
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 41,249 + -2.2 41,249 + +0.6 41,250 - -3.0 41,329 + AZOBR_RS29835 0.20 -0.8 41,329 + AZOBR_RS29835 0.20 -3.1 41,330 - AZOBR_RS29835 0.20 -3.3 41,330 - AZOBR_RS29835 0.20 -3.4 41,330 - AZOBR_RS29835 0.20 -0.3 41,330 - AZOBR_RS29835 0.20 +0.9 41,330 - AZOBR_RS29835 0.20 -0.8 41,476 + AZOBR_RS29835 0.43 +0.4 41,477 - AZOBR_RS29835 0.43 -0.4 41,539 + AZOBR_RS29835 0.52 +0.6 41,540 - AZOBR_RS29835 0.53 -1.6 41,540 - AZOBR_RS29835 0.53 -0.1 41,563 + AZOBR_RS29835 0.56 -1.0 41,563 + AZOBR_RS29835 0.56 -1.3 41,849 + -0.8 41,849 + +1.1 41,876 + -1.0 42,002 + AZOBR_RS29840 0.17 -0.6 42,002 + AZOBR_RS29840 0.17 -1.6 42,012 - AZOBR_RS29840 0.18 -0.2 42,102 - AZOBR_RS29840 0.27 +0.5 42,102 - AZOBR_RS29840 0.27 +1.8 42,161 + AZOBR_RS29840 0.33 -0.5 42,161 + AZOBR_RS29840 0.33 -0.2 42,161 + AZOBR_RS29840 0.33 -0.2 42,161 + AZOBR_RS29840 0.33 -0.2 42,161 + AZOBR_RS29840 0.33 -0.1 42,296 + AZOBR_RS29840 0.48 +0.6 42,296 + AZOBR_RS29840 0.48 -0.3 42,296 + AZOBR_RS29840 0.48 +0.5 42,297 - AZOBR_RS29840 0.48 +1.4 42,297 - AZOBR_RS29840 0.48 +1.0 42,297 - AZOBR_RS29840 0.48 +0.4 42,399 - AZOBR_RS29840 0.58 +0.1 42,848 + +0.2 42,848 + -1.6 42,849 - +0.4 42,849 - -0.1 43,072 + -0.9 43,072 + +0.9 43,072 + +0.2 43,072 + +1.5 43,073 - -0.3 43,073 - -0.0 43,546 + AZOBR_RS29845 0.45 +0.6 43,546 + AZOBR_RS29845 0.45 +0.2 43,547 - AZOBR_RS29845 0.45 -0.5 43,547 - AZOBR_RS29845 0.45 -0.8 43,547 - AZOBR_RS29845 0.45 +0.1 43,547 - AZOBR_RS29845 0.45 -3.9 43,627 + AZOBR_RS29845 0.53 -0.2 43,627 + AZOBR_RS29845 0.53 -0.1 43,628 - AZOBR_RS29845 0.53 -2.0 43,628 - AZOBR_RS29845 0.53 +0.6 43,630 + AZOBR_RS29845 0.53 -1.2 43,630 + AZOBR_RS29845 0.53 +0.2 43,631 - AZOBR_RS29845 0.54 -0.3 43,631 - AZOBR_RS29845 0.54 -0.7 43,631 - AZOBR_RS29845 0.54 +0.1
Or see this region's nucleotide sequence