Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29615 and AZOBR_RS29620 are separated by 11 nucleotides AZOBR_RS29620 and AZOBR_RS29625 are separated by 114 nucleotides AZOBR_RS29625 and AZOBR_RS29630 are separated by 121 nucleotides
AZOBR_RS29615: AZOBR_RS29615 - arginine ABC transporter ATP-binding protein, at 773,996 to 774,751
_RS29615
AZOBR_RS29620: AZOBR_RS29620 - cyclohexadienyl dehydratase precursor, at 774,763 to 775,602
_RS29620
AZOBR_RS29625: AZOBR_RS29625 - agmatinase, at 775,717 to 776,787
_RS29625
AZOBR_RS29630: AZOBR_RS29630 - amidase hydantoinase/carbamoylase family, at 776,909 to 778,102
_RS29630
Position (kb) 775
776
777 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 774.890 kb on - strand, within AZOBR_RS29620 at 774.890 kb on - strand, within AZOBR_RS29620 at 774.949 kb on + strand, within AZOBR_RS29620 at 774.949 kb on + strand, within AZOBR_RS29620 at 774.949 kb on + strand, within AZOBR_RS29620 at 774.950 kb on - strand, within AZOBR_RS29620 at 774.950 kb on - strand, within AZOBR_RS29620 at 774.950 kb on - strand, within AZOBR_RS29620 at 774.950 kb on - strand, within AZOBR_RS29620 at 774.950 kb on - strand, within AZOBR_RS29620 at 775.126 kb on + strand, within AZOBR_RS29620 at 775.127 kb on - strand, within AZOBR_RS29620 at 775.127 kb on - strand, within AZOBR_RS29620 at 775.127 kb on - strand, within AZOBR_RS29620 at 775.537 kb on + strand at 775.537 kb on + strand at 775.537 kb on + strand at 775.537 kb on + strand at 775.537 kb on + strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.556 kb on - strand at 775.822 kb on + strand at 775.823 kb on - strand at 775.903 kb on + strand, within AZOBR_RS29625 at 775.903 kb on + strand, within AZOBR_RS29625 at 775.904 kb on - strand, within AZOBR_RS29625 at 775.904 kb on - strand, within AZOBR_RS29625 at 775.904 kb on - strand, within AZOBR_RS29625 at 775.981 kb on + strand, within AZOBR_RS29625 at 775.981 kb on + strand, within AZOBR_RS29625 at 775.982 kb on - strand, within AZOBR_RS29625 at 776.033 kb on - strand, within AZOBR_RS29625 at 776.065 kb on + strand, within AZOBR_RS29625 at 776.065 kb on + strand, within AZOBR_RS29625 at 776.066 kb on - strand, within AZOBR_RS29625 at 776.185 kb on + strand, within AZOBR_RS29625 at 776.186 kb on - strand, within AZOBR_RS29625 at 776.347 kb on + strand, within AZOBR_RS29625 at 776.347 kb on + strand, within AZOBR_RS29625 at 776.347 kb on + strand, within AZOBR_RS29625 at 776.348 kb on - strand, within AZOBR_RS29625 at 776.348 kb on - strand, within AZOBR_RS29625 at 776.348 kb on - strand, within AZOBR_RS29625 at 776.348 kb on - strand, within AZOBR_RS29625 at 776.348 kb on - strand, within AZOBR_RS29625 at 776.417 kb on - strand, within AZOBR_RS29625 at 776.417 kb on - strand, within AZOBR_RS29625 at 776.507 kb on - strand, within AZOBR_RS29625 at 776.527 kb on + strand, within AZOBR_RS29625 at 776.527 kb on + strand, within AZOBR_RS29625 at 776.528 kb on - strand, within AZOBR_RS29625 at 776.620 kb on + strand, within AZOBR_RS29625 at 776.620 kb on + strand, within AZOBR_RS29625 at 776.620 kb on + strand, within AZOBR_RS29625 at 776.621 kb on - strand, within AZOBR_RS29625 at 776.710 kb on + strand at 776.710 kb on + strand at 776.726 kb on - strand at 776.737 kb on + strand at 776.737 kb on + strand at 776.737 kb on + strand at 776.738 kb on - strand at 776.738 kb on - strand at 776.738 kb on - strand at 776.851 kb on + strand at 776.851 kb on + strand at 776.851 kb on + strand at 776.851 kb on + strand at 776.852 kb on - strand at 777.093 kb on - strand, within AZOBR_RS29630 at 777.590 kb on + strand, within AZOBR_RS29630
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 774,890 - AZOBR_RS29620 0.15 +1.6 774,890 - AZOBR_RS29620 0.15 +1.4 774,949 + AZOBR_RS29620 0.22 +0.2 774,949 + AZOBR_RS29620 0.22 -0.9 774,949 + AZOBR_RS29620 0.22 -0.7 774,950 - AZOBR_RS29620 0.22 -0.0 774,950 - AZOBR_RS29620 0.22 +1.4 774,950 - AZOBR_RS29620 0.22 -0.2 774,950 - AZOBR_RS29620 0.22 +1.0 774,950 - AZOBR_RS29620 0.22 -0.5 775,126 + AZOBR_RS29620 0.43 +0.6 775,127 - AZOBR_RS29620 0.43 +0.6 775,127 - AZOBR_RS29620 0.43 +1.5 775,127 - AZOBR_RS29620 0.43 +1.8 775,537 + -1.5 775,537 + +0.8 775,537 + +1.0 775,537 + -1.2 775,537 + -2.9 775,538 - +0.2 775,538 - +3.0 775,538 - +1.2 775,538 - -2.6 775,538 - +1.1 775,538 - -3.1 775,538 - +0.1 775,538 - +0.3 775,538 - -0.1 775,538 - -2.9 775,538 - -1.3 775,538 - +3.4 775,538 - -0.6 775,556 - +2.4 775,822 + -0.8 775,823 - +0.7 775,903 + AZOBR_RS29625 0.17 -1.8 775,903 + AZOBR_RS29625 0.17 +0.7 775,904 - AZOBR_RS29625 0.17 -0.3 775,904 - AZOBR_RS29625 0.17 -0.4 775,904 - AZOBR_RS29625 0.17 +0.7 775,981 + AZOBR_RS29625 0.25 -0.1 775,981 + AZOBR_RS29625 0.25 -1.4 775,982 - AZOBR_RS29625 0.25 +0.3 776,033 - AZOBR_RS29625 0.30 -0.6 776,065 + AZOBR_RS29625 0.32 +2.1 776,065 + AZOBR_RS29625 0.32 +1.3 776,066 - AZOBR_RS29625 0.33 +0.3 776,185 + AZOBR_RS29625 0.44 +1.4 776,186 - AZOBR_RS29625 0.44 -3.5 776,347 + AZOBR_RS29625 0.59 +1.2 776,347 + AZOBR_RS29625 0.59 +0.0 776,347 + AZOBR_RS29625 0.59 +0.2 776,348 - AZOBR_RS29625 0.59 -2.7 776,348 - AZOBR_RS29625 0.59 -0.4 776,348 - AZOBR_RS29625 0.59 -0.0 776,348 - AZOBR_RS29625 0.59 -0.2 776,348 - AZOBR_RS29625 0.59 +0.3 776,417 - AZOBR_RS29625 0.65 +0.7 776,417 - AZOBR_RS29625 0.65 -0.3 776,507 - AZOBR_RS29625 0.74 +0.5 776,527 + AZOBR_RS29625 0.76 -0.4 776,527 + AZOBR_RS29625 0.76 +0.4 776,528 - AZOBR_RS29625 0.76 -0.7 776,620 + AZOBR_RS29625 0.84 +1.1 776,620 + AZOBR_RS29625 0.84 -1.0 776,620 + AZOBR_RS29625 0.84 +0.8 776,621 - AZOBR_RS29625 0.84 -1.0 776,710 + -0.1 776,710 + +0.7 776,726 - +0.8 776,737 + -0.7 776,737 + -0.2 776,737 + -1.7 776,738 - -1.4 776,738 - -0.0 776,738 - -0.6 776,851 + +0.4 776,851 + +0.1 776,851 + +0.7 776,851 + -0.1 776,852 - -1.0 777,093 - AZOBR_RS29630 0.15 +0.1 777,590 + AZOBR_RS29630 0.57 +0.9
Or see this region's nucleotide sequence