Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29605 and AZOBR_RS29610 are separated by 369 nucleotides AZOBR_RS29610 and AZOBR_RS29615 are separated by 36 nucleotides AZOBR_RS29615 and AZOBR_RS29620 are separated by 11 nucleotides
AZOBR_RS29605: AZOBR_RS29605 - transposase, at 771,947 to 772,924
_RS29605
AZOBR_RS29610: AZOBR_RS29610 - hypothetical protein, at 773,294 to 773,959
_RS29610
AZOBR_RS29615: AZOBR_RS29615 - arginine ABC transporter ATP-binding protein, at 773,996 to 774,751
_RS29615
AZOBR_RS29620: AZOBR_RS29620 - cyclohexadienyl dehydratase precursor, at 774,763 to 775,602
_RS29620
Position (kb) 773
774 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 772.563 kb on - strand, within AZOBR_RS29605 at 772.782 kb on + strand, within AZOBR_RS29605 at 772.782 kb on + strand, within AZOBR_RS29605 at 772.996 kb on - strand at 773.047 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.068 kb on - strand at 773.068 kb on - strand at 773.379 kb on + strand, within AZOBR_RS29610 at 773.453 kb on - strand, within AZOBR_RS29610 at 773.462 kb on - strand, within AZOBR_RS29610 at 773.522 kb on + strand, within AZOBR_RS29610 at 773.523 kb on - strand, within AZOBR_RS29610 at 773.525 kb on + strand, within AZOBR_RS29610 at 773.526 kb on - strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.849 kb on + strand, within AZOBR_RS29610 at 773.849 kb on + strand, within AZOBR_RS29610 at 773.903 kb on + strand at 774.026 kb on + strand at 774.026 kb on + strand at 774.194 kb on + strand, within AZOBR_RS29615 at 774.194 kb on + strand, within AZOBR_RS29615 at 774.194 kb on + strand at 774.195 kb on - strand, within AZOBR_RS29615 at 774.890 kb on - strand, within AZOBR_RS29620 at 774.890 kb on - strand, within AZOBR_RS29620 at 774.949 kb on + strand, within AZOBR_RS29620 at 774.949 kb on + strand, within AZOBR_RS29620 at 774.949 kb on + strand, within AZOBR_RS29620 at 774.950 kb on - strand, within AZOBR_RS29620 at 774.950 kb on - strand, within AZOBR_RS29620 at 774.950 kb on - strand, within AZOBR_RS29620 at 774.950 kb on - strand, within AZOBR_RS29620 at 774.950 kb on - strand, within AZOBR_RS29620
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 772,563 - AZOBR_RS29605 0.63 +1.9 772,782 + AZOBR_RS29605 0.85 -0.7 772,782 + AZOBR_RS29605 0.85 -0.6 772,996 - -2.8 773,047 + +0.5 773,065 + +0.1 773,065 + -0.4 773,065 + +1.0 773,065 + +1.1 773,065 + -0.5 773,065 + +0.3 773,065 + +0.0 773,065 + -0.3 773,065 + +0.4 773,066 - +0.5 773,066 - +0.8 773,066 - +0.8 773,066 - -0.3 773,066 - -0.7 773,066 - -0.3 773,066 - +0.7 773,066 - +0.1 773,066 - -1.9 773,066 - +0.1 773,068 - -2.2 773,068 - +0.6 773,379 + AZOBR_RS29610 0.13 -1.2 773,453 - AZOBR_RS29610 0.24 -1.0 773,462 - AZOBR_RS29610 0.25 -0.0 773,522 + AZOBR_RS29610 0.34 +0.1 773,523 - AZOBR_RS29610 0.34 -2.7 773,525 + AZOBR_RS29610 0.35 +0.5 773,526 - AZOBR_RS29610 0.35 +0.5 773,606 + AZOBR_RS29610 0.47 -1.3 773,606 + AZOBR_RS29610 0.47 -2.7 773,606 + AZOBR_RS29610 0.47 +0.9 773,606 + AZOBR_RS29610 0.47 -1.4 773,606 + AZOBR_RS29610 0.47 +0.3 773,606 + AZOBR_RS29610 0.47 +0.0 773,606 + AZOBR_RS29610 0.47 +0.1 773,606 + AZOBR_RS29610 0.47 +0.4 773,607 - AZOBR_RS29610 0.47 +0.4 773,607 - AZOBR_RS29610 0.47 -0.7 773,607 - AZOBR_RS29610 0.47 -0.1 773,607 - AZOBR_RS29610 0.47 +1.0 773,607 - AZOBR_RS29610 0.47 +0.1 773,607 - AZOBR_RS29610 0.47 -0.7 773,607 - AZOBR_RS29610 0.47 +0.5 773,607 - AZOBR_RS29610 0.47 -0.3 773,849 + AZOBR_RS29610 0.83 -2.9 773,849 + AZOBR_RS29610 0.83 +3.7 773,903 + +0.4 774,026 + +0.2 774,026 + +0.2 774,194 + AZOBR_RS29615 0.26 +0.3 774,194 + AZOBR_RS29615 0.26 +2.7 774,194 + +0.9 774,195 - AZOBR_RS29615 0.26 +0.1 774,890 - AZOBR_RS29620 0.15 +1.6 774,890 - AZOBR_RS29620 0.15 +1.4 774,949 + AZOBR_RS29620 0.22 +0.2 774,949 + AZOBR_RS29620 0.22 -0.9 774,949 + AZOBR_RS29620 0.22 -0.7 774,950 - AZOBR_RS29620 0.22 -0.0 774,950 - AZOBR_RS29620 0.22 +1.4 774,950 - AZOBR_RS29620 0.22 -0.2 774,950 - AZOBR_RS29620 0.22 +1.0 774,950 - AZOBR_RS29620 0.22 -0.5
Or see this region's nucleotide sequence