Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28060 and AZOBR_RS28065 are separated by 22 nucleotides AZOBR_RS28065 and AZOBR_RS28070 overlap by 4 nucleotides AZOBR_RS28070 and AZOBR_RS28075 are separated by 7 nucleotides AZOBR_RS28075 and AZOBR_RS28080 are separated by 121 nucleotides
AZOBR_RS28060: AZOBR_RS28060 - hypothetical protein, at 463,944 to 464,495
_RS28060
AZOBR_RS28065: AZOBR_RS28065 - hypothetical protein, at 464,518 to 464,835
_RS28065
AZOBR_RS28070: AZOBR_RS28070 - hypothetical protein, at 464,832 to 465,290
_RS28070
AZOBR_RS28075: AZOBR_RS28075 - membrane protein, at 465,298 to 466,434
_RS28075
AZOBR_RS28080: AZOBR_RS28080 - GntR family transcriptional regulator, at 466,556 to 467,281
_RS28080
Position (kb) 465
466
467 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 464.520 kb on - strand at 464.520 kb on - strand at 464.579 kb on + strand, within AZOBR_RS28065 at 464.579 kb on + strand, within AZOBR_RS28065 at 464.579 kb on + strand, within AZOBR_RS28065 at 464.579 kb on + strand, within AZOBR_RS28065 at 464.580 kb on - strand, within AZOBR_RS28065 at 464.580 kb on - strand, within AZOBR_RS28065 at 464.580 kb on - strand, within AZOBR_RS28065 at 464.580 kb on - strand, within AZOBR_RS28065 at 464.762 kb on + strand, within AZOBR_RS28065 at 465.080 kb on - strand, within AZOBR_RS28070 at 465.136 kb on - strand, within AZOBR_RS28070 at 465.285 kb on - strand at 465.285 kb on - strand at 465.569 kb on + strand, within AZOBR_RS28075 at 465.570 kb on - strand, within AZOBR_RS28075 at 465.570 kb on - strand, within AZOBR_RS28075 at 465.570 kb on - strand, within AZOBR_RS28075 at 465.570 kb on - strand, within AZOBR_RS28075 at 465.570 kb on - strand, within AZOBR_RS28075 at 465.570 kb on - strand, within AZOBR_RS28075 at 465.623 kb on + strand, within AZOBR_RS28075 at 465.624 kb on - strand, within AZOBR_RS28075 at 465.624 kb on - strand, within AZOBR_RS28075 at 465.648 kb on - strand, within AZOBR_RS28075 at 465.806 kb on + strand, within AZOBR_RS28075 at 465.806 kb on + strand, within AZOBR_RS28075 at 465.807 kb on - strand, within AZOBR_RS28075 at 465.807 kb on - strand, within AZOBR_RS28075 at 465.932 kb on + strand, within AZOBR_RS28075 at 465.933 kb on - strand, within AZOBR_RS28075 at 465.933 kb on - strand, within AZOBR_RS28075 at 465.956 kb on + strand, within AZOBR_RS28075 at 465.957 kb on - strand, within AZOBR_RS28075 at 466.016 kb on + strand, within AZOBR_RS28075 at 466.017 kb on - strand, within AZOBR_RS28075 at 466.788 kb on + strand, within AZOBR_RS28080
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 464,520 - +0.4 464,520 - -0.3 464,579 + AZOBR_RS28065 0.19 +0.3 464,579 + AZOBR_RS28065 0.19 +2.2 464,579 + AZOBR_RS28065 0.19 +0.2 464,579 + AZOBR_RS28065 0.19 -0.0 464,580 - AZOBR_RS28065 0.19 +1.6 464,580 - AZOBR_RS28065 0.19 -0.3 464,580 - AZOBR_RS28065 0.19 +0.5 464,580 - AZOBR_RS28065 0.19 -0.6 464,762 + AZOBR_RS28065 0.77 -0.5 465,080 - AZOBR_RS28070 0.54 +0.8 465,136 - AZOBR_RS28070 0.66 -2.9 465,285 - +0.6 465,285 - -0.6 465,569 + AZOBR_RS28075 0.24 +0.1 465,570 - AZOBR_RS28075 0.24 +1.9 465,570 - AZOBR_RS28075 0.24 -0.2 465,570 - AZOBR_RS28075 0.24 -0.3 465,570 - AZOBR_RS28075 0.24 +0.5 465,570 - AZOBR_RS28075 0.24 +0.3 465,570 - AZOBR_RS28075 0.24 -2.0 465,623 + AZOBR_RS28075 0.29 +0.6 465,624 - AZOBR_RS28075 0.29 -0.3 465,624 - AZOBR_RS28075 0.29 -0.6 465,648 - AZOBR_RS28075 0.31 +2.3 465,806 + AZOBR_RS28075 0.45 +0.4 465,806 + AZOBR_RS28075 0.45 +0.5 465,807 - AZOBR_RS28075 0.45 +0.5 465,807 - AZOBR_RS28075 0.45 -0.3 465,932 + AZOBR_RS28075 0.56 +1.2 465,933 - AZOBR_RS28075 0.56 +1.0 465,933 - AZOBR_RS28075 0.56 +0.8 465,956 + AZOBR_RS28075 0.58 +0.7 465,957 - AZOBR_RS28075 0.58 +1.3 466,016 + AZOBR_RS28075 0.63 +0.1 466,017 - AZOBR_RS28075 0.63 -0.9 466,788 + AZOBR_RS28080 0.32 -0.7
Or see this region's nucleotide sequence