Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27920 and AZOBR_RS27925 are separated by 11 nucleotides AZOBR_RS27925 and AZOBR_RS27930 are separated by 13 nucleotides
AZOBR_RS27920: AZOBR_RS27920 - xylose isomerase, at 433,599 to 434,906
_RS27920
AZOBR_RS27925: AZOBR_RS27925 - oxidoreductase, at 434,918 to 436,093
_RS27925
AZOBR_RS27930: AZOBR_RS27930 - AP endonuclease, at 436,107 to 437,162
_RS27930
Position (kb) 434
435
436
437 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 434.153 kb on - strand, within AZOBR_RS27920 at 434.177 kb on - strand, within AZOBR_RS27920 at 434.177 kb on - strand, within AZOBR_RS27920 at 434.351 kb on - strand, within AZOBR_RS27920 at 434.351 kb on - strand, within AZOBR_RS27920 at 434.351 kb on - strand, within AZOBR_RS27920 at 434.456 kb on - strand, within AZOBR_RS27920 at 434.761 kb on + strand, within AZOBR_RS27920 at 434.824 kb on + strand at 434.893 kb on + strand at 434.893 kb on + strand at 435.078 kb on + strand, within AZOBR_RS27925 at 435.103 kb on - strand, within AZOBR_RS27925 at 435.655 kb on - strand, within AZOBR_RS27925 at 435.655 kb on - strand, within AZOBR_RS27925 at 435.882 kb on + strand, within AZOBR_RS27925 at 436.292 kb on - strand, within AZOBR_RS27930 at 436.459 kb on + strand, within AZOBR_RS27930 at 436.471 kb on + strand, within AZOBR_RS27930 at 436.721 kb on - strand, within AZOBR_RS27930 at 436.721 kb on - strand at 436.727 kb on - strand, within AZOBR_RS27930 at 436.886 kb on - strand, within AZOBR_RS27930
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 434,153 - AZOBR_RS27920 0.42 -0.2 434,177 - AZOBR_RS27920 0.44 -0.1 434,177 - AZOBR_RS27920 0.44 -1.0 434,351 - AZOBR_RS27920 0.57 -0.0 434,351 - AZOBR_RS27920 0.57 -2.9 434,351 - AZOBR_RS27920 0.57 +1.4 434,456 - AZOBR_RS27920 0.66 +2.8 434,761 + AZOBR_RS27920 0.89 +1.8 434,824 + +0.1 434,893 + +0.2 434,893 + +0.7 435,078 + AZOBR_RS27925 0.14 +0.1 435,103 - AZOBR_RS27925 0.16 -0.5 435,655 - AZOBR_RS27925 0.63 -2.3 435,655 - AZOBR_RS27925 0.63 -0.7 435,882 + AZOBR_RS27925 0.82 +0.3 436,292 - AZOBR_RS27930 0.18 +0.2 436,459 + AZOBR_RS27930 0.33 +1.0 436,471 + AZOBR_RS27930 0.34 -1.2 436,721 - AZOBR_RS27930 0.58 +1.1 436,721 - +0.3 436,727 - AZOBR_RS27930 0.59 +0.6 436,886 - AZOBR_RS27930 0.74 +0.5
Or see this region's nucleotide sequence