Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26965

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26960 and AZOBR_RS26965 are separated by 523 nucleotidesAZOBR_RS26965 and AZOBR_RS26970 are separated by 92 nucleotidesAZOBR_RS26970 and AZOBR_RS26975 are separated by 172 nucleotides AZOBR_RS26960: AZOBR_RS26960 - hypothetical protein, at 194,304 to 196,016 _RS26960 AZOBR_RS26965: AZOBR_RS26965 - 30S ribosomal protein S21, at 196,540 to 196,743 _RS26965 AZOBR_RS26970: AZOBR_RS26970 - translation initiation factor IF-3, at 196,836 to 197,369 _RS26970 AZOBR_RS26975: AZOBR_RS26975 - secretion protein HylD, at 197,542 to 198,684 _RS26975 Position (kb) 196 197Strain fitness (log2 ratio) -3 -2 -1 0 1at 195.567 kb on + strand, within AZOBR_RS26960at 195.567 kb on + strand, within AZOBR_RS26960at 195.567 kb on + strand, within AZOBR_RS26960at 195.567 kb on + strand, within AZOBR_RS26960at 195.567 kb on + strand, within AZOBR_RS26960at 195.568 kb on - strand, within AZOBR_RS26960at 196.282 kb on + strandat 196.282 kb on + strandat 196.282 kb on + strandat 196.282 kb on + strandat 196.283 kb on - strandat 196.283 kb on - strandat 196.283 kb on - strandat 196.283 kb on - strandat 196.837 kb on + strandat 196.842 kb on - strandat 197.398 kb on + strandat 197.398 kb on + strandat 197.399 kb on - strandat 197.511 kb on + strandat 197.512 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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195,567 + AZOBR_RS26960 0.74 +0.2
195,567 + AZOBR_RS26960 0.74 +0.0
195,567 + AZOBR_RS26960 0.74 -0.3
195,567 + AZOBR_RS26960 0.74 +1.4
195,567 + AZOBR_RS26960 0.74 +0.4
195,568 - AZOBR_RS26960 0.74 -0.6
196,282 + +0.8
196,282 + -3.4
196,282 + -0.8
196,282 + -0.2
196,283 - -0.4
196,283 - -0.1
196,283 - +0.1
196,283 - -0.3
196,837 + -0.7
196,842 - +0.2
197,398 + -0.8
197,398 + +0.4
197,399 - -1.0
197,511 + -1.0
197,512 - +0.1

Or see this region's nucleotide sequence