Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26945 and AZOBR_RS26950 are separated by 421 nucleotides AZOBR_RS26950 and AZOBR_RS26955 are separated by 30 nucleotides AZOBR_RS26955 and AZOBR_RS26960 are separated by 260 nucleotides
AZOBR_RS26945: AZOBR_RS26945 - branched-chain amino acid ABC transporter, at 191,835 to 192,545
_RS26945
AZOBR_RS26950: AZOBR_RS26950 - membrane protein, at 192,967 to 193,626
_RS26950
AZOBR_RS26955: AZOBR_RS26955 - two-component response regulator, at 193,657 to 194,043
_RS26955
AZOBR_RS26960: AZOBR_RS26960 - hypothetical protein, at 194,304 to 196,016
_RS26960
Position (kb) 192
193
194 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 192.090 kb on + strand, within AZOBR_RS26945 at 192.091 kb on - strand, within AZOBR_RS26945 at 192.189 kb on + strand, within AZOBR_RS26945 at 192.190 kb on - strand, within AZOBR_RS26945 at 192.190 kb on - strand, within AZOBR_RS26945 at 192.190 kb on - strand, within AZOBR_RS26945 at 192.746 kb on + strand at 192.747 kb on - strand at 193.088 kb on + strand, within AZOBR_RS26950 at 193.194 kb on - strand, within AZOBR_RS26950 at 193.250 kb on + strand, within AZOBR_RS26950 at 193.268 kb on + strand, within AZOBR_RS26950 at 193.269 kb on - strand, within AZOBR_RS26950 at 194.106 kb on + strand at 194.107 kb on - strand at 194.186 kb on - strand at 194.186 kb on - strand at 194.421 kb on + strand at 194.568 kb on + strand, within AZOBR_RS26960 at 194.568 kb on + strand, within AZOBR_RS26960 at 194.568 kb on + strand, within AZOBR_RS26960 at 194.595 kb on - strand, within AZOBR_RS26960
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 192,090 + AZOBR_RS26945 0.36 +0.2 192,091 - AZOBR_RS26945 0.36 -0.4 192,189 + AZOBR_RS26945 0.50 +0.1 192,190 - AZOBR_RS26945 0.50 +0.3 192,190 - AZOBR_RS26945 0.50 +0.8 192,190 - AZOBR_RS26945 0.50 +0.4 192,746 + +0.3 192,747 - -0.6 193,088 + AZOBR_RS26950 0.18 +0.0 193,194 - AZOBR_RS26950 0.34 -1.0 193,250 + AZOBR_RS26950 0.43 -0.5 193,268 + AZOBR_RS26950 0.46 -2.8 193,269 - AZOBR_RS26950 0.46 -0.3 194,106 + -0.9 194,107 - -0.3 194,186 - -3.0 194,186 - -0.1 194,421 + -0.9 194,568 + AZOBR_RS26960 0.15 +0.3 194,568 + AZOBR_RS26960 0.15 +1.1 194,568 + AZOBR_RS26960 0.15 +0.2 194,595 - AZOBR_RS26960 0.17 +0.2
Or see this region's nucleotide sequence