Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26670 and AZOBR_RS26675 are separated by 5 nucleotides AZOBR_RS26675 and AZOBR_RS26680 are separated by 85 nucleotides AZOBR_RS26680 and AZOBR_RS26685 are separated by 49 nucleotides
AZOBR_RS26670: AZOBR_RS26670 - zinc transporter ZitB, at 130,881 to 131,759
_RS26670
AZOBR_RS26675: AZOBR_RS26675 - IclR family transcriptional regulator, at 131,765 to 132,649
_RS26675
AZOBR_RS26680: AZOBR_RS26680 - ABC transporter permease, at 132,735 to 133,655
_RS26680
AZOBR_RS26685: AZOBR_RS26685 - ABC transporter permease, at 133,705 to 135,468
_RS26685
Position (kb) 132
133
134 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 131.973 kb on + strand, within AZOBR_RS26675 at 131.973 kb on + strand, within AZOBR_RS26675 at 132.129 kb on + strand, within AZOBR_RS26675 at 132.129 kb on + strand, within AZOBR_RS26675 at 132.129 kb on + strand, within AZOBR_RS26675 at 132.309 kb on + strand, within AZOBR_RS26675 at 132.310 kb on - strand, within AZOBR_RS26675 at 132.310 kb on - strand, within AZOBR_RS26675 at 132.316 kb on - strand, within AZOBR_RS26675 at 132.316 kb on - strand, within AZOBR_RS26675 at 132.349 kb on - strand, within AZOBR_RS26675 at 132.378 kb on + strand, within AZOBR_RS26675 at 132.685 kb on + strand at 132.686 kb on - strand at 132.691 kb on + strand at 132.691 kb on + strand at 132.692 kb on - strand at 132.692 kb on - strand at 132.766 kb on + strand at 132.766 kb on + strand at 132.766 kb on + strand at 132.766 kb on + strand at 132.767 kb on - strand at 132.767 kb on - strand at 132.767 kb on - strand at 132.767 kb on - strand at 132.767 kb on - strand at 133.138 kb on + strand, within AZOBR_RS26680 at 133.138 kb on + strand, within AZOBR_RS26680 at 133.138 kb on + strand, within AZOBR_RS26680 at 133.139 kb on - strand, within AZOBR_RS26680 at 133.139 kb on - strand, within AZOBR_RS26680 at 133.139 kb on - strand, within AZOBR_RS26680 at 133.139 kb on - strand, within AZOBR_RS26680 at 133.244 kb on - strand, within AZOBR_RS26680 at 133.276 kb on + strand, within AZOBR_RS26680 at 133.321 kb on + strand, within AZOBR_RS26680 at 133.322 kb on - strand, within AZOBR_RS26680 at 133.322 kb on - strand, within AZOBR_RS26680 at 133.548 kb on + strand, within AZOBR_RS26680 at 133.660 kb on + strand at 133.660 kb on + strand at 133.660 kb on + strand at 133.660 kb on + strand at 133.660 kb on + strand at 133.660 kb on + strand at 133.661 kb on - strand at 133.661 kb on - strand at 133.661 kb on - strand at 133.661 kb on - strand at 133.745 kb on + strand at 133.746 kb on - strand at 133.746 kb on - strand at 133.940 kb on - strand, within AZOBR_RS26685 at 134.021 kb on + strand, within AZOBR_RS26685 at 134.022 kb on - strand, within AZOBR_RS26685 at 134.057 kb on + strand, within AZOBR_RS26685 at 134.057 kb on + strand, within AZOBR_RS26685 at 134.057 kb on + strand, within AZOBR_RS26685 at 134.058 kb on - strand, within AZOBR_RS26685 at 134.058 kb on - strand, within AZOBR_RS26685 at 134.132 kb on + strand, within AZOBR_RS26685 at 134.132 kb on + strand, within AZOBR_RS26685 at 134.133 kb on - strand, within AZOBR_RS26685 at 134.133 kb on - strand, within AZOBR_RS26685 at 134.342 kb on + strand, within AZOBR_RS26685 at 134.342 kb on + strand, within AZOBR_RS26685 at 134.343 kb on - strand, within AZOBR_RS26685
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 131,973 + AZOBR_RS26675 0.24 -0.3 131,973 + AZOBR_RS26675 0.24 -2.2 132,129 + AZOBR_RS26675 0.41 -0.1 132,129 + AZOBR_RS26675 0.41 -1.2 132,129 + AZOBR_RS26675 0.41 -0.7 132,309 + AZOBR_RS26675 0.61 -2.4 132,310 - AZOBR_RS26675 0.62 -0.6 132,310 - AZOBR_RS26675 0.62 -2.3 132,316 - AZOBR_RS26675 0.62 -1.9 132,316 - AZOBR_RS26675 0.62 -0.6 132,349 - AZOBR_RS26675 0.66 -1.1 132,378 + AZOBR_RS26675 0.69 -1.3 132,685 + -0.5 132,686 - -0.7 132,691 + +0.1 132,691 + -0.6 132,692 - +1.3 132,692 - +0.2 132,766 + -2.4 132,766 + +0.8 132,766 + +0.4 132,766 + -1.3 132,767 - +0.7 132,767 - +0.4 132,767 - -1.0 132,767 - -1.2 132,767 - -0.4 133,138 + AZOBR_RS26680 0.44 -0.6 133,138 + AZOBR_RS26680 0.44 +1.1 133,138 + AZOBR_RS26680 0.44 +1.1 133,139 - AZOBR_RS26680 0.44 -2.5 133,139 - AZOBR_RS26680 0.44 -0.1 133,139 - AZOBR_RS26680 0.44 +0.5 133,139 - AZOBR_RS26680 0.44 +2.1 133,244 - AZOBR_RS26680 0.55 -0.3 133,276 + AZOBR_RS26680 0.59 -0.2 133,321 + AZOBR_RS26680 0.64 -2.2 133,322 - AZOBR_RS26680 0.64 -0.8 133,322 - AZOBR_RS26680 0.64 +1.8 133,548 + AZOBR_RS26680 0.88 +0.1 133,660 + -2.6 133,660 + +0.2 133,660 + -0.3 133,660 + -0.1 133,660 + -2.9 133,660 + -0.4 133,661 - -1.7 133,661 - -1.5 133,661 - +0.6 133,661 - -0.6 133,745 + +0.0 133,746 - +2.6 133,746 - +3.0 133,940 - AZOBR_RS26685 0.13 +0.8 134,021 + AZOBR_RS26685 0.18 -0.2 134,022 - AZOBR_RS26685 0.18 -2.6 134,057 + AZOBR_RS26685 0.20 +0.5 134,057 + AZOBR_RS26685 0.20 +1.1 134,057 + AZOBR_RS26685 0.20 +0.1 134,058 - AZOBR_RS26685 0.20 -4.1 134,058 - AZOBR_RS26685 0.20 +0.3 134,132 + AZOBR_RS26685 0.24 -0.0 134,132 + AZOBR_RS26685 0.24 +0.1 134,133 - AZOBR_RS26685 0.24 -1.4 134,133 - AZOBR_RS26685 0.24 +0.2 134,342 + AZOBR_RS26685 0.36 +0.2 134,342 + AZOBR_RS26685 0.36 -0.4 134,343 - AZOBR_RS26685 0.36 -0.4
Or see this region's nucleotide sequence