Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26625 and AZOBR_RS26630 are separated by 65 nucleotides AZOBR_RS26630 and AZOBR_RS26635 are separated by 32 nucleotides AZOBR_RS26635 and AZOBR_RS26640 are separated by 88 nucleotides
AZOBR_RS26625: AZOBR_RS26625 - dehydroascorbate transporter, at 117,927 to 119,210
_RS26625
AZOBR_RS26630: AZOBR_RS26630 - ABC transporter permease, at 119,276 to 119,785
_RS26630
AZOBR_RS26635: AZOBR_RS26635 - mandelate racemase, at 119,818 to 120,999
_RS26635
AZOBR_RS26640: AZOBR_RS26640 - ABC transporter substrate-binding protein, at 121,088 to 122,107
_RS26640
Position (kb)
119
120
121 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 118.819 kb on + strand, within AZOBR_RS26625 at 118.820 kb on - strand, within AZOBR_RS26625 at 119.391 kb on + strand, within AZOBR_RS26630 at 119.391 kb on + strand, within AZOBR_RS26630 at 119.391 kb on + strand, within AZOBR_RS26630 at 119.843 kb on + strand at 120.017 kb on + strand, within AZOBR_RS26635 at 120.017 kb on + strand, within AZOBR_RS26635 at 120.227 kb on + strand, within AZOBR_RS26635 at 120.228 kb on - strand, within AZOBR_RS26635 at 120.377 kb on + strand at 120.378 kb on - strand, within AZOBR_RS26635 at 120.378 kb on - strand, within AZOBR_RS26635 at 120.566 kb on + strand, within AZOBR_RS26635 at 120.567 kb on - strand, within AZOBR_RS26635 at 120.578 kb on + strand, within AZOBR_RS26635 at 120.578 kb on + strand, within AZOBR_RS26635 at 120.579 kb on - strand, within AZOBR_RS26635 at 120.708 kb on - strand, within AZOBR_RS26635 at 120.708 kb on - strand, within AZOBR_RS26635 at 120.708 kb on - strand, within AZOBR_RS26635 at 120.743 kb on + strand, within AZOBR_RS26635 at 120.743 kb on + strand, within AZOBR_RS26635 at 120.744 kb on - strand, within AZOBR_RS26635 at 120.938 kb on + strand at 120.938 kb on + strand at 120.938 kb on + strand at 120.938 kb on + strand at 120.938 kb on + strand at 120.939 kb on - strand at 120.939 kb on - strand at 120.939 kb on - strand at 120.939 kb on - strand at 121.173 kb on + strand at 121.398 kb on + strand, within AZOBR_RS26640 at 121.422 kb on + strand, within AZOBR_RS26640 at 121.422 kb on + strand, within AZOBR_RS26640 at 121.423 kb on - strand, within AZOBR_RS26640 at 121.423 kb on - strand, within AZOBR_RS26640 at 121.437 kb on + strand, within AZOBR_RS26640 at 121.437 kb on + strand, within AZOBR_RS26640 at 121.438 kb on - strand, within AZOBR_RS26640
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 118,819 + AZOBR_RS26625 0.69 +0.1 118,820 - AZOBR_RS26625 0.70 +0.5 119,391 + AZOBR_RS26630 0.23 -1.1 119,391 + AZOBR_RS26630 0.23 +0.2 119,391 + AZOBR_RS26630 0.23 -0.8 119,843 + -1.6 120,017 + AZOBR_RS26635 0.17 -0.4 120,017 + AZOBR_RS26635 0.17 -2.6 120,227 + AZOBR_RS26635 0.35 -0.3 120,228 - AZOBR_RS26635 0.35 +0.4 120,377 + +1.2 120,378 - AZOBR_RS26635 0.47 +0.3 120,378 - AZOBR_RS26635 0.47 -1.0 120,566 + AZOBR_RS26635 0.63 -0.6 120,567 - AZOBR_RS26635 0.63 +0.6 120,578 + AZOBR_RS26635 0.64 +0.9 120,578 + AZOBR_RS26635 0.64 -0.5 120,579 - AZOBR_RS26635 0.64 +0.2 120,708 - AZOBR_RS26635 0.75 +1.5 120,708 - AZOBR_RS26635 0.75 +1.0 120,708 - AZOBR_RS26635 0.75 -0.0 120,743 + AZOBR_RS26635 0.78 +0.8 120,743 + AZOBR_RS26635 0.78 -0.7 120,744 - AZOBR_RS26635 0.78 +0.3 120,938 + -0.5 120,938 + -0.4 120,938 + -0.4 120,938 + +0.0 120,938 + -0.6 120,939 - +0.4 120,939 - +1.8 120,939 - -1.8 120,939 - -0.1 121,173 + +0.1 121,398 + AZOBR_RS26640 0.30 -0.2 121,422 + AZOBR_RS26640 0.33 +0.7 121,422 + AZOBR_RS26640 0.33 +0.2 121,423 - AZOBR_RS26640 0.33 -0.8 121,423 - AZOBR_RS26640 0.33 -0.6 121,437 + AZOBR_RS26640 0.34 -0.8 121,437 + AZOBR_RS26640 0.34 +0.0 121,438 - AZOBR_RS26640 0.34 -1.1
Or see this region's nucleotide sequence