Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26620 and AZOBR_RS26625 are separated by 119 nucleotides AZOBR_RS26625 and AZOBR_RS26630 are separated by 65 nucleotides AZOBR_RS26630 and AZOBR_RS26635 are separated by 32 nucleotides
AZOBR_RS26620: AZOBR_RS26620 - putative transcriptional regulator GntR family, at 117,133 to 117,807
_RS26620
AZOBR_RS26625: AZOBR_RS26625 - dehydroascorbate transporter, at 117,927 to 119,210
_RS26625
AZOBR_RS26630: AZOBR_RS26630 - ABC transporter permease, at 119,276 to 119,785
_RS26630
AZOBR_RS26635: AZOBR_RS26635 - mandelate racemase, at 119,818 to 120,999
_RS26635
Position (kb) 117
118
119
120 Strain fitness (log2 ratio) -2
-1
0
1 at 117.134 kb on + strand at 117.458 kb on + strand, within AZOBR_RS26620 at 117.458 kb on + strand, within AZOBR_RS26620 at 117.458 kb on + strand, within AZOBR_RS26620 at 117.459 kb on - strand, within AZOBR_RS26620 at 117.605 kb on + strand, within AZOBR_RS26620 at 117.686 kb on + strand, within AZOBR_RS26620 at 117.867 kb on + strand at 117.867 kb on + strand at 118.144 kb on + strand, within AZOBR_RS26625 at 118.417 kb on + strand, within AZOBR_RS26625 at 118.472 kb on - strand, within AZOBR_RS26625 at 118.472 kb on - strand, within AZOBR_RS26625 at 118.735 kb on + strand, within AZOBR_RS26625 at 118.736 kb on - strand, within AZOBR_RS26625 at 118.819 kb on + strand, within AZOBR_RS26625 at 118.820 kb on - strand, within AZOBR_RS26625 at 119.391 kb on + strand, within AZOBR_RS26630 at 119.391 kb on + strand, within AZOBR_RS26630 at 119.391 kb on + strand, within AZOBR_RS26630 at 119.843 kb on + strand at 120.017 kb on + strand, within AZOBR_RS26635 at 120.017 kb on + strand, within AZOBR_RS26635
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 117,134 + +0.4 117,458 + AZOBR_RS26620 0.48 -2.2 117,458 + AZOBR_RS26620 0.48 +0.8 117,458 + AZOBR_RS26620 0.48 -1.4 117,459 - AZOBR_RS26620 0.48 -1.3 117,605 + AZOBR_RS26620 0.70 +0.0 117,686 + AZOBR_RS26620 0.82 +0.5 117,867 + -1.0 117,867 + +1.2 118,144 + AZOBR_RS26625 0.17 +1.0 118,417 + AZOBR_RS26625 0.38 -1.1 118,472 - AZOBR_RS26625 0.42 -0.8 118,472 - AZOBR_RS26625 0.42 -1.6 118,735 + AZOBR_RS26625 0.63 +0.4 118,736 - AZOBR_RS26625 0.63 -0.8 118,819 + AZOBR_RS26625 0.69 +0.1 118,820 - AZOBR_RS26625 0.70 +0.5 119,391 + AZOBR_RS26630 0.23 -1.1 119,391 + AZOBR_RS26630 0.23 +0.2 119,391 + AZOBR_RS26630 0.23 -0.8 119,843 + -1.6 120,017 + AZOBR_RS26635 0.17 -0.4 120,017 + AZOBR_RS26635 0.17 -2.6
Or see this region's nucleotide sequence