Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26405 and AZOBR_RS26410 overlap by 14 nucleotides AZOBR_RS26410 and AZOBR_RS26415 are separated by 14 nucleotides AZOBR_RS26415 and AZOBR_RS26420 are separated by 30 nucleotides
AZOBR_RS26405: AZOBR_RS26405 - amino acid ABC transporter ATP-binding protein, at 69,719 to 70,447
_RS26405
AZOBR_RS26410: AZOBR_RS26410 - amino acid ABC transporter permease, at 70,434 to 71,084
_RS26410
AZOBR_RS26415: AZOBR_RS26415 - ABC transporter permease, at 71,099 to 71,758
_RS26415
AZOBR_RS26420: AZOBR_RS26420 - amino acid deaminase, at 71,789 to 73,087
_RS26420
Position (kb) 71
72 Strain fitness (log2 ratio) -2
-1
0
1 at 70.410 kb on + strand at 70.410 kb on + strand at 70.411 kb on - strand at 70.504 kb on + strand, within AZOBR_RS26410 at 70.505 kb on - strand, within AZOBR_RS26410 at 70.505 kb on - strand, within AZOBR_RS26410 at 70.687 kb on + strand, within AZOBR_RS26410 at 70.799 kb on - strand, within AZOBR_RS26410 at 71.178 kb on + strand, within AZOBR_RS26415 at 71.178 kb on + strand, within AZOBR_RS26415 at 71.178 kb on + strand, within AZOBR_RS26415 at 71.200 kb on - strand, within AZOBR_RS26415 at 71.200 kb on - strand, within AZOBR_RS26415 at 71.217 kb on + strand, within AZOBR_RS26415 at 71.460 kb on + strand, within AZOBR_RS26415 at 71.461 kb on - strand, within AZOBR_RS26415 at 71.473 kb on - strand, within AZOBR_RS26415 at 71.592 kb on + strand, within AZOBR_RS26415 at 71.808 kb on + strand at 72.450 kb on + strand, within AZOBR_RS26420 at 72.451 kb on - strand, within AZOBR_RS26420 at 72.451 kb on - strand, within AZOBR_RS26420 at 72.451 kb on - strand, within AZOBR_RS26420
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 70,410 + -1.7 70,410 + -2.2 70,411 - -0.6 70,504 + AZOBR_RS26410 0.11 +0.4 70,505 - AZOBR_RS26410 0.11 +0.6 70,505 - AZOBR_RS26410 0.11 -0.4 70,687 + AZOBR_RS26410 0.39 -1.0 70,799 - AZOBR_RS26410 0.56 -1.4 71,178 + AZOBR_RS26415 0.12 +0.2 71,178 + AZOBR_RS26415 0.12 +0.1 71,178 + AZOBR_RS26415 0.12 -1.9 71,200 - AZOBR_RS26415 0.15 -1.0 71,200 - AZOBR_RS26415 0.15 +0.1 71,217 + AZOBR_RS26415 0.18 -0.7 71,460 + AZOBR_RS26415 0.55 +1.2 71,461 - AZOBR_RS26415 0.55 +0.8 71,473 - AZOBR_RS26415 0.57 -1.5 71,592 + AZOBR_RS26415 0.75 +0.9 71,808 + +0.1 72,450 + AZOBR_RS26420 0.51 +0.2 72,451 - AZOBR_RS26420 0.51 -0.9 72,451 - AZOBR_RS26420 0.51 -0.9 72,451 - AZOBR_RS26420 0.51 +0.2
Or see this region's nucleotide sequence