Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26390 and AZOBR_RS26395 are separated by 90 nucleotides AZOBR_RS26395 and AZOBR_RS26400 are separated by 35 nucleotides AZOBR_RS26400 and AZOBR_RS26405 are separated by 81 nucleotides AZOBR_RS26405 and AZOBR_RS26410 overlap by 14 nucleotides
AZOBR_RS26390: AZOBR_RS26390 - deacylase, at 67,317 to 68,363
_RS26390
AZOBR_RS26395: AZOBR_RS26395 - endoribonuclease, at 68,454 to 68,798
_RS26395
AZOBR_RS26400: AZOBR_RS26400 - ABC transporter substrate-binding protein, at 68,834 to 69,637
_RS26400
AZOBR_RS26405: AZOBR_RS26405 - amino acid ABC transporter ATP-binding protein, at 69,719 to 70,447
_RS26405
AZOBR_RS26410: AZOBR_RS26410 - amino acid ABC transporter permease, at 70,434 to 71,084
_RS26410
Position (kb) 68
69
70 Strain fitness (log2 ratio) -2
-1
0
1 at 68.182 kb on + strand, within AZOBR_RS26390 at 68.266 kb on + strand at 68.267 kb on - strand at 68.267 kb on - strand at 68.267 kb on - strand at 68.393 kb on + strand at 68.443 kb on + strand at 68.443 kb on + strand at 68.444 kb on - strand at 68.560 kb on + strand, within AZOBR_RS26395 at 68.560 kb on + strand, within AZOBR_RS26395 at 68.835 kb on + strand at 68.835 kb on + strand at 68.910 kb on + strand at 68.998 kb on + strand, within AZOBR_RS26400 at 68.998 kb on + strand, within AZOBR_RS26400 at 68.999 kb on - strand, within AZOBR_RS26400 at 68.999 kb on - strand, within AZOBR_RS26400 at 69.088 kb on - strand, within AZOBR_RS26400 at 69.247 kb on - strand, within AZOBR_RS26400 at 69.247 kb on - strand, within AZOBR_RS26400 at 69.271 kb on - strand, within AZOBR_RS26400 at 69.271 kb on - strand, within AZOBR_RS26400 at 70.410 kb on + strand at 70.410 kb on + strand at 70.411 kb on - strand at 70.504 kb on + strand, within AZOBR_RS26410 at 70.505 kb on - strand, within AZOBR_RS26410 at 70.505 kb on - strand, within AZOBR_RS26410
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 68,182 + AZOBR_RS26390 0.83 +0.0 68,266 + +1.2 68,267 - -0.1 68,267 - +0.9 68,267 - -0.9 68,393 + +0.1 68,443 + -0.2 68,443 + +0.8 68,444 - -0.8 68,560 + AZOBR_RS26395 0.31 +0.8 68,560 + AZOBR_RS26395 0.31 +1.0 68,835 + -0.0 68,835 + +1.5 68,910 + +0.2 68,998 + AZOBR_RS26400 0.20 -0.5 68,998 + AZOBR_RS26400 0.20 +0.5 68,999 - AZOBR_RS26400 0.21 -1.0 68,999 - AZOBR_RS26400 0.21 -1.6 69,088 - AZOBR_RS26400 0.32 +0.0 69,247 - AZOBR_RS26400 0.51 +0.5 69,247 - AZOBR_RS26400 0.51 +0.0 69,271 - AZOBR_RS26400 0.54 +0.8 69,271 - AZOBR_RS26400 0.54 -0.4 70,410 + -1.7 70,410 + -2.2 70,411 - -0.6 70,504 + AZOBR_RS26410 0.11 +0.4 70,505 - AZOBR_RS26410 0.11 +0.6 70,505 - AZOBR_RS26410 0.11 -0.4
Or see this region's nucleotide sequence