Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25625 and AZOBR_RS25630 are separated by 23 nucleotides AZOBR_RS25630 and AZOBR_RS25635 overlap by 4 nucleotides AZOBR_RS25635 and AZOBR_RS25645 are separated by 997 nucleotides
AZOBR_RS25625: AZOBR_RS25625 - leucine/isoleucine/valine transporter ATP-binding subunit, at 797,760 to 798,458
_RS25625
AZOBR_RS25630: AZOBR_RS25630 - ABC transporter, at 798,482 to 799,249
_RS25630
AZOBR_RS25635: AZOBR_RS25635 - high-affinity branched-chain amino acid ABC transporter (permease protein) (fragment), at 799,246 to 800,232
_RS25635
AZOBR_RS25645: AZOBR_RS25645 - amino acid ABC transporter substrate-binding protein, at 801,230 to 802,342
_RS25645
Position (kb) 799
800
801 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 798.501 kb on + strand at 798.501 kb on + strand at 798.768 kb on + strand, within AZOBR_RS25630 at 798.769 kb on - strand, within AZOBR_RS25630 at 799.547 kb on + strand, within AZOBR_RS25635 at 799.548 kb on - strand, within AZOBR_RS25635 at 799.548 kb on - strand, within AZOBR_RS25635 at 799.548 kb on - strand, within AZOBR_RS25635 at 799.548 kb on - strand, within AZOBR_RS25635 at 799.548 kb on - strand, within AZOBR_RS25635 at 799.697 kb on + strand, within AZOBR_RS25635 at 799.697 kb on + strand, within AZOBR_RS25635 at 799.697 kb on + strand, within AZOBR_RS25635 at 799.698 kb on - strand, within AZOBR_RS25635 at 799.757 kb on + strand, within AZOBR_RS25635 at 799.758 kb on - strand, within AZOBR_RS25635 at 799.758 kb on - strand, within AZOBR_RS25635 at 799.760 kb on + strand, within AZOBR_RS25635 at 799.760 kb on + strand, within AZOBR_RS25635 at 799.760 kb on - strand, within AZOBR_RS25635 at 799.761 kb on - strand, within AZOBR_RS25635 at 799.761 kb on - strand, within AZOBR_RS25635 at 799.868 kb on + strand, within AZOBR_RS25635 at 799.907 kb on + strand, within AZOBR_RS25635 at 799.908 kb on - strand, within AZOBR_RS25635 at 799.908 kb on - strand, within AZOBR_RS25635 at 799.908 kb on - strand, within AZOBR_RS25635 at 800.034 kb on - strand, within AZOBR_RS25635 at 800.048 kb on + strand, within AZOBR_RS25635 at 800.048 kb on + strand, within AZOBR_RS25635 at 800.049 kb on - strand, within AZOBR_RS25635 at 800.156 kb on + strand at 800.156 kb on + strand at 800.157 kb on - strand at 800.508 kb on + strand at 800.508 kb on + strand at 800.509 kb on - strand at 800.509 kb on - strand at 800.598 kb on + strand at 800.598 kb on + strand at 800.598 kb on + strand at 800.599 kb on - strand at 800.599 kb on - strand at 800.668 kb on + strand at 800.767 kb on + strand at 800.767 kb on + strand at 801.043 kb on + strand at 801.043 kb on + strand at 801.044 kb on - strand at 801.118 kb on + strand at 801.119 kb on - strand at 801.119 kb on - strand at 801.119 kb on - strand at 801.160 kb on + strand at 801.160 kb on + strand at 801.160 kb on + strand at 801.160 kb on + strand at 801.161 kb on - strand at 801.161 kb on - strand at 801.163 kb on + strand at 801.163 kb on + strand at 801.163 kb on + strand at 801.163 kb on + strand at 801.164 kb on - strand at 801.164 kb on - strand at 801.164 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 798,501 + +0.4 798,501 + -0.7 798,768 + AZOBR_RS25630 0.37 +1.0 798,769 - AZOBR_RS25630 0.37 -1.1 799,547 + AZOBR_RS25635 0.30 +1.6 799,548 - AZOBR_RS25635 0.31 -0.4 799,548 - AZOBR_RS25635 0.31 +0.6 799,548 - AZOBR_RS25635 0.31 +1.9 799,548 - AZOBR_RS25635 0.31 -0.3 799,548 - AZOBR_RS25635 0.31 +1.0 799,697 + AZOBR_RS25635 0.46 -0.6 799,697 + AZOBR_RS25635 0.46 +1.3 799,697 + AZOBR_RS25635 0.46 -0.1 799,698 - AZOBR_RS25635 0.46 +0.8 799,757 + AZOBR_RS25635 0.52 +0.5 799,758 - AZOBR_RS25635 0.52 +0.1 799,758 - AZOBR_RS25635 0.52 -2.1 799,760 + AZOBR_RS25635 0.52 -0.4 799,760 + AZOBR_RS25635 0.52 +1.5 799,760 - AZOBR_RS25635 0.52 -0.3 799,761 - AZOBR_RS25635 0.52 +0.6 799,761 - AZOBR_RS25635 0.52 +0.4 799,868 + AZOBR_RS25635 0.63 -0.2 799,907 + AZOBR_RS25635 0.67 -1.5 799,908 - AZOBR_RS25635 0.67 +0.3 799,908 - AZOBR_RS25635 0.67 +0.8 799,908 - AZOBR_RS25635 0.67 +1.0 800,034 - AZOBR_RS25635 0.80 +0.4 800,048 + AZOBR_RS25635 0.81 -1.4 800,048 + AZOBR_RS25635 0.81 +3.3 800,049 - AZOBR_RS25635 0.81 -1.9 800,156 + +0.9 800,156 + +0.1 800,157 - -1.5 800,508 + +0.2 800,508 + +0.5 800,509 - -0.4 800,509 - +0.3 800,598 + +0.4 800,598 + -0.1 800,598 + +0.1 800,599 - +0.5 800,599 - -0.7 800,668 + -1.3 800,767 + +0.2 800,767 + +0.7 801,043 + +0.1 801,043 + -2.7 801,044 - -0.8 801,118 + +0.4 801,119 - -0.1 801,119 - +0.4 801,119 - -1.4 801,160 + +0.1 801,160 + -0.4 801,160 + +0.4 801,160 + +0.3 801,161 - -0.2 801,161 - -1.4 801,163 + -2.4 801,163 + -0.1 801,163 + -3.2 801,163 + -0.3 801,164 - -1.8 801,164 - +0.9 801,164 - +0.3
Or see this region's nucleotide sequence