Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25465 and AZOBR_RS25470 are separated by 157 nucleotides AZOBR_RS25470 and AZOBR_RS25475 overlap by 4 nucleotides AZOBR_RS25475 and AZOBR_RS25480 overlap by 4 nucleotides
AZOBR_RS25465: AZOBR_RS25465 - sarcosine oxidase subunit beta, at 766,707 to 767,957
_RS25465
AZOBR_RS25470: AZOBR_RS25470 - ABC transporter permease, at 768,115 to 769,008
_RS25470
AZOBR_RS25475: AZOBR_RS25475 - amino acid ABC transporter permease, at 769,005 to 769,880
_RS25475
AZOBR_RS25480: AZOBR_RS25480 - sugar ABC transporter ATPase, at 769,877 to 770,647
_RS25480
Position (kb) 768
769
770 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 767.188 kb on + strand, within AZOBR_RS25465 at 767.188 kb on + strand, within AZOBR_RS25465 at 767.188 kb on + strand, within AZOBR_RS25465 at 767.189 kb on - strand, within AZOBR_RS25465 at 767.680 kb on + strand, within AZOBR_RS25465 at 767.708 kb on - strand, within AZOBR_RS25465 at 767.947 kb on + strand at 767.947 kb on + strand at 768.160 kb on + strand at 768.160 kb on + strand at 768.160 kb on + strand at 768.160 kb on + strand at 768.160 kb on + strand at 768.505 kb on + strand, within AZOBR_RS25470 at 768.505 kb on + strand, within AZOBR_RS25470 at 768.506 kb on - strand, within AZOBR_RS25470 at 768.506 kb on - strand, within AZOBR_RS25470 at 768.781 kb on + strand, within AZOBR_RS25470 at 768.781 kb on + strand, within AZOBR_RS25470 at 768.782 kb on - strand, within AZOBR_RS25470 at 769.071 kb on + strand at 769.071 kb on + strand at 769.072 kb on - strand at 769.080 kb on + strand at 769.419 kb on + strand, within AZOBR_RS25475 at 769.420 kb on - strand, within AZOBR_RS25475 at 769.420 kb on - strand, within AZOBR_RS25475 at 769.593 kb on + strand, within AZOBR_RS25475 at 769.593 kb on + strand, within AZOBR_RS25475 at 769.788 kb on + strand, within AZOBR_RS25475 at 769.789 kb on - strand, within AZOBR_RS25475
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 767,188 + AZOBR_RS25465 0.38 -0.2 767,188 + AZOBR_RS25465 0.38 +2.2 767,188 + AZOBR_RS25465 0.38 -2.7 767,189 - AZOBR_RS25465 0.39 -1.9 767,680 + AZOBR_RS25465 0.78 -0.4 767,708 - AZOBR_RS25465 0.80 +0.4 767,947 + -2.9 767,947 + +0.9 768,160 + -0.4 768,160 + -0.4 768,160 + +0.7 768,160 + +0.6 768,160 + +0.1 768,505 + AZOBR_RS25470 0.44 -3.3 768,505 + AZOBR_RS25470 0.44 +0.2 768,506 - AZOBR_RS25470 0.44 +1.6 768,506 - AZOBR_RS25470 0.44 -0.3 768,781 + AZOBR_RS25470 0.74 -0.4 768,781 + AZOBR_RS25470 0.74 -1.8 768,782 - AZOBR_RS25470 0.75 -1.8 769,071 + -0.2 769,071 + +1.0 769,072 - +0.6 769,080 + -0.6 769,419 + AZOBR_RS25475 0.47 -0.4 769,420 - AZOBR_RS25475 0.47 -1.6 769,420 - AZOBR_RS25475 0.47 +0.6 769,593 + AZOBR_RS25475 0.67 +0.3 769,593 + AZOBR_RS25475 0.67 +0.4 769,788 + AZOBR_RS25475 0.89 -0.1 769,789 - AZOBR_RS25475 0.89 -0.0
Or see this region's nucleotide sequence