Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS24505 and AZOBR_RS24510 are separated by 22 nucleotides AZOBR_RS24510 and AZOBR_RS24515 are separated by 184 nucleotides AZOBR_RS24515 and AZOBR_RS24520 are separated by 30 nucleotides
AZOBR_RS24505: AZOBR_RS24505 - hypothetical protein, at 557,649 to 558,743
_RS24505
AZOBR_RS24510: AZOBR_RS24510 - methylenetetrahydromethanopterin dehydrogenase, at 558,766 to 559,662
_RS24510
AZOBR_RS24515: AZOBR_RS24515 - hypothetical protein, at 559,847 to 560,107
_RS24515
AZOBR_RS24520: AZOBR_RS24520 - hypothetical protein, at 560,138 to 560,740
_RS24520
Position (kb) 558
559
560 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 557.851 kb on + strand, within AZOBR_RS24505 at 558.081 kb on + strand, within AZOBR_RS24505 at 558.081 kb on + strand, within AZOBR_RS24505 at 558.082 kb on - strand, within AZOBR_RS24505 at 558.082 kb on - strand, within AZOBR_RS24505 at 558.082 kb on - strand, within AZOBR_RS24505 at 558.082 kb on - strand, within AZOBR_RS24505 at 558.269 kb on - strand, within AZOBR_RS24505 at 558.346 kb on + strand, within AZOBR_RS24505 at 558.347 kb on - strand, within AZOBR_RS24505 at 559.235 kb on - strand, within AZOBR_RS24510 at 559.559 kb on + strand, within AZOBR_RS24510 at 559.560 kb on - strand, within AZOBR_RS24510 at 559.560 kb on - strand, within AZOBR_RS24510 at 559.560 kb on - strand, within AZOBR_RS24510 at 559.560 kb on - strand, within AZOBR_RS24510 at 559.560 kb on - strand, within AZOBR_RS24510 at 559.649 kb on + strand at 559.649 kb on + strand at 559.649 kb on + strand at 559.649 kb on + strand at 559.650 kb on - strand at 559.650 kb on - strand at 559.650 kb on - strand at 559.650 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 557,851 + AZOBR_RS24505 0.18 +0.2 558,081 + AZOBR_RS24505 0.39 -3.6 558,081 + AZOBR_RS24505 0.39 +0.1 558,082 - AZOBR_RS24505 0.40 +0.3 558,082 - AZOBR_RS24505 0.40 -1.7 558,082 - AZOBR_RS24505 0.40 -0.1 558,082 - AZOBR_RS24505 0.40 +0.0 558,269 - AZOBR_RS24505 0.57 -0.6 558,346 + AZOBR_RS24505 0.64 -0.4 558,347 - AZOBR_RS24505 0.64 +0.7 559,235 - AZOBR_RS24510 0.52 +0.4 559,559 + AZOBR_RS24510 0.88 +0.7 559,560 - AZOBR_RS24510 0.89 +0.4 559,560 - AZOBR_RS24510 0.89 -1.5 559,560 - AZOBR_RS24510 0.89 +1.5 559,560 - AZOBR_RS24510 0.89 -0.5 559,560 - AZOBR_RS24510 0.89 -0.3 559,649 + +0.2 559,649 + +1.5 559,649 + -0.1 559,649 + -0.6 559,650 - +0.3 559,650 - +0.6 559,650 - -0.2 559,650 - -0.5
Or see this region's nucleotide sequence