Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS24480 and AZOBR_RS24485 are separated by 5 nucleotides AZOBR_RS24485 and AZOBR_RS24490 are separated by 83 nucleotides AZOBR_RS24490 and AZOBR_RS24500 are separated by 907 nucleotides
AZOBR_RS24480: AZOBR_RS24480 - putative histidine biosynthesis protein, at 553,486 to 554,193
_RS24480
AZOBR_RS24485: AZOBR_RS24485 - aldehyde-activating protein, at 554,199 to 554,720
_RS24485
AZOBR_RS24490: AZOBR_RS24490 - hypothetical protein, at 554,804 to 555,649
_RS24490
AZOBR_RS24500: AZOBR_RS24500 - N(5) N(10)-methenyltetrahydromethanopterin cyclohydrolase, at 556,557 to 557,546
_RS24500
Position (kb) 554
555
556 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 554.191 kb on + strand at 554.191 kb on + strand at 554.303 kb on - strand, within AZOBR_RS24485 at 554.303 kb on - strand, within AZOBR_RS24485 at 554.308 kb on + strand, within AZOBR_RS24485 at 554.308 kb on + strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.739 kb on + strand at 554.740 kb on - strand at 554.740 kb on - strand at 554.881 kb on - strand at 554.881 kb on - strand at 554.881 kb on - strand at 554.881 kb on - strand at 554.979 kb on - strand, within AZOBR_RS24490 at 555.052 kb on - strand, within AZOBR_RS24490 at 555.052 kb on - strand, within AZOBR_RS24490 at 555.150 kb on + strand, within AZOBR_RS24490 at 555.151 kb on - strand, within AZOBR_RS24490 at 555.831 kb on + strand at 555.832 kb on - strand at 555.832 kb on - strand at 556.041 kb on + strand at 556.041 kb on + strand at 556.042 kb on - strand at 556.045 kb on - strand at 556.045 kb on - strand at 556.164 kb on + strand at 556.165 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 554,191 + +0.7 554,191 + +1.1 554,303 - AZOBR_RS24485 0.20 -0.4 554,303 - AZOBR_RS24485 0.20 -0.1 554,308 + AZOBR_RS24485 0.21 -0.1 554,308 + AZOBR_RS24485 0.21 +1.2 554,309 - AZOBR_RS24485 0.21 +0.1 554,309 - AZOBR_RS24485 0.21 -2.3 554,309 - AZOBR_RS24485 0.21 -0.1 554,309 - AZOBR_RS24485 0.21 +0.1 554,309 - AZOBR_RS24485 0.21 -3.1 554,739 + -0.5 554,740 - +0.4 554,740 - -2.8 554,881 - +0.5 554,881 - -3.4 554,881 - -1.1 554,881 - +0.6 554,979 - AZOBR_RS24490 0.21 +0.7 555,052 - AZOBR_RS24490 0.29 +0.9 555,052 - AZOBR_RS24490 0.29 +0.5 555,150 + AZOBR_RS24490 0.41 +0.1 555,151 - AZOBR_RS24490 0.41 +0.2 555,831 + -1.3 555,832 - -0.6 555,832 - +0.1 556,041 + +0.6 556,041 + +2.2 556,042 - +1.5 556,045 - -0.5 556,045 - -0.5 556,164 + -1.4 556,165 - -1.1
Or see this region's nucleotide sequence