Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS24370

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS24365 and AZOBR_RS24370 overlap by 4 nucleotidesAZOBR_RS24370 and AZOBR_RS24375 overlap by 55 nucleotides AZOBR_RS24365: AZOBR_RS24365 - hypothetical protein, at 516,727 to 517,728 _RS24365 AZOBR_RS24370: AZOBR_RS24370 - hypothetical protein, at 517,725 to 518,237 _RS24370 AZOBR_RS24375: AZOBR_RS24375 - membrane protein, at 518,183 to 519,262 _RS24375 Position (kb) 517 518 519Strain fitness (log2 ratio) -2 -1 0 1at 516.790 kb on + strandat 516.790 kb on + strandat 516.790 kb on + strandat 516.790 kb on + strandat 516.791 kb on - strandat 516.791 kb on - strandat 516.791 kb on - strandat 517.000 kb on + strand, within AZOBR_RS24365at 517.000 kb on + strand, within AZOBR_RS24365at 517.001 kb on - strand, within AZOBR_RS24365at 517.001 kb on - strand, within AZOBR_RS24365at 517.482 kb on + strand, within AZOBR_RS24365at 517.483 kb on - strand, within AZOBR_RS24365at 518.230 kb on + strandat 519.056 kb on + strand, within AZOBR_RS24375at 519.057 kb on - strand, within AZOBR_RS24375at 519.057 kb on - strand, within AZOBR_RS24375at 519.057 kb on - strand, within AZOBR_RS24375

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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516,790 + -1.9
516,790 + +0.1
516,790 + +0.4
516,790 + -0.4
516,791 - -1.9
516,791 - +0.7
516,791 - -0.0
517,000 + AZOBR_RS24365 0.27 -1.2
517,000 + AZOBR_RS24365 0.27 -0.8
517,001 - AZOBR_RS24365 0.27 -0.6
517,001 - AZOBR_RS24365 0.27 -2.1
517,482 + AZOBR_RS24365 0.75 -0.1
517,483 - AZOBR_RS24365 0.75 -0.8
518,230 + +0.4
519,056 + AZOBR_RS24375 0.81 -0.5
519,057 - AZOBR_RS24375 0.81 +0.1
519,057 - AZOBR_RS24375 0.81 +0.3
519,057 - AZOBR_RS24375 0.81 -2.3

Or see this region's nucleotide sequence