Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS19605 and AZOBR_RS19610 overlap by 14 nucleotides AZOBR_RS19610 and AZOBR_RS19615 are separated by 34 nucleotides AZOBR_RS19615 and AZOBR_RS19620 are separated by 41 nucleotides
AZOBR_RS19605: AZOBR_RS19605 - TetR family transcriptional regulator, at 1,170,018 to 1,170,668
_RS19605
AZOBR_RS19610: AZOBR_RS19610 - activator of HSP90 ATPase, at 1,170,655 to 1,171,119
_RS19610
AZOBR_RS19615: AZOBR_RS19615 - glyoxalase/bleomycin resistance protein/dioxygenase, at 1,171,154 to 1,171,588
_RS19615
AZOBR_RS19620: AZOBR_RS19620 - hypothetical protein, at 1,171,630 to 1,171,995
_RS19620
Position (kb)
1170
1171 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1169.412 kb on - strand at 1169.467 kb on + strand at 1169.467 kb on + strand at 1169.468 kb on - strand at 1169.653 kb on - strand at 1169.694 kb on + strand at 1169.699 kb on - strand at 1169.699 kb on - strand at 1169.749 kb on + strand at 1169.750 kb on - strand at 1169.842 kb on + strand at 1169.844 kb on + strand at 1170.216 kb on + strand, within AZOBR_RS19605 at 1170.216 kb on + strand, within AZOBR_RS19605 at 1170.297 kb on + strand, within AZOBR_RS19605 at 1170.378 kb on + strand, within AZOBR_RS19605 at 1170.378 kb on + strand, within AZOBR_RS19605 at 1170.609 kb on + strand at 1171.000 kb on + strand, within AZOBR_RS19610 at 1171.000 kb on + strand, within AZOBR_RS19610 at 1171.001 kb on - strand, within AZOBR_RS19610 at 1171.001 kb on - strand, within AZOBR_RS19610 at 1171.169 kb on + strand at 1171.169 kb on + strand at 1171.169 kb on + strand at 1171.169 kb on + strand at 1171.170 kb on - strand at 1171.170 kb on - strand at 1171.212 kb on - strand, within AZOBR_RS19615 at 1171.242 kb on - strand, within AZOBR_RS19615 at 1171.242 kb on - strand, within AZOBR_RS19615 at 1171.242 kb on - strand, within AZOBR_RS19615 at 1171.370 kb on + strand, within AZOBR_RS19615 at 1171.370 kb on + strand, within AZOBR_RS19615 at 1171.370 kb on + strand, within AZOBR_RS19615 at 1171.370 kb on + strand, within AZOBR_RS19615 at 1171.370 kb on + strand, within AZOBR_RS19615 at 1171.370 kb on + strand, within AZOBR_RS19615 at 1171.370 kb on + strand, within AZOBR_RS19615 at 1171.371 kb on - strand, within AZOBR_RS19615 at 1171.371 kb on - strand, within AZOBR_RS19615 at 1171.371 kb on - strand, within AZOBR_RS19615 at 1171.371 kb on - strand, within AZOBR_RS19615 at 1171.371 kb on - strand, within AZOBR_RS19615 at 1171.636 kb on + strand at 1171.636 kb on + strand at 1171.637 kb on - strand at 1171.637 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,169,412 - +1.2 1,169,467 + -2.3 1,169,467 + +0.6 1,169,468 - +0.1 1,169,653 - -0.8 1,169,694 + -0.7 1,169,699 - +0.1 1,169,699 - +1.6 1,169,749 + -0.0 1,169,750 - -0.1 1,169,842 + -2.8 1,169,844 + +0.4 1,170,216 + AZOBR_RS19605 0.30 +1.1 1,170,216 + AZOBR_RS19605 0.30 -1.0 1,170,297 + AZOBR_RS19605 0.43 -2.4 1,170,378 + AZOBR_RS19605 0.55 -0.4 1,170,378 + AZOBR_RS19605 0.55 -0.0 1,170,609 + +0.7 1,171,000 + AZOBR_RS19610 0.74 -1.0 1,171,000 + AZOBR_RS19610 0.74 -1.0 1,171,001 - AZOBR_RS19610 0.74 +0.1 1,171,001 - AZOBR_RS19610 0.74 +0.4 1,171,169 + -0.5 1,171,169 + +0.4 1,171,169 + -0.7 1,171,169 + +1.2 1,171,170 - -0.7 1,171,170 - +1.7 1,171,212 - AZOBR_RS19615 0.13 -0.5 1,171,242 - AZOBR_RS19615 0.20 -2.9 1,171,242 - AZOBR_RS19615 0.20 -0.1 1,171,242 - AZOBR_RS19615 0.20 -0.1 1,171,370 + AZOBR_RS19615 0.50 +1.3 1,171,370 + AZOBR_RS19615 0.50 +0.1 1,171,370 + AZOBR_RS19615 0.50 +0.4 1,171,370 + AZOBR_RS19615 0.50 -0.1 1,171,370 + AZOBR_RS19615 0.50 -1.4 1,171,370 + AZOBR_RS19615 0.50 +1.8 1,171,370 + AZOBR_RS19615 0.50 -0.4 1,171,371 - AZOBR_RS19615 0.50 -2.9 1,171,371 - AZOBR_RS19615 0.50 +4.0 1,171,371 - AZOBR_RS19615 0.50 +1.5 1,171,371 - AZOBR_RS19615 0.50 +0.3 1,171,371 - AZOBR_RS19615 0.50 +1.2 1,171,636 + -0.7 1,171,636 + -2.6 1,171,637 - +0.7 1,171,637 - +0.1
Or see this region's nucleotide sequence