Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS19010 and AZOBR_RS19015 are separated by 164 nucleotides AZOBR_RS19015 and AZOBR_RS19020 are separated by 80 nucleotides AZOBR_RS19020 and AZOBR_RS19025 are separated by 135 nucleotides
AZOBR_RS19010: AZOBR_RS19010 - hypothetical protein, at 1,035,489 to 1,036,175
_RS19010
AZOBR_RS19015: AZOBR_RS19015 - regulator, at 1,036,340 to 1,036,900
_RS19015
AZOBR_RS19020: AZOBR_RS19020 - multidrug ABC transporter permease, at 1,036,981 to 1,037,784
_RS19020
AZOBR_RS19025: AZOBR_RS19025 - acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] (from data) , at 1,037,920 to 1,039,089
_RS19025
Position (kb)
1036
1037
1038 Strain fitness (log2 ratio)
-2
-1
0
1 at 1036.341 kb on + strand at 1036.392 kb on + strand at 1037.050 kb on + strand at 1037.128 kb on + strand, within AZOBR_RS19020 at 1037.128 kb on + strand, within AZOBR_RS19020 at 1037.128 kb on + strand, within AZOBR_RS19020 at 1037.129 kb on - strand, within AZOBR_RS19020 at 1037.186 kb on - strand, within AZOBR_RS19020 at 1037.579 kb on - strand, within AZOBR_RS19020 at 1037.686 kb on - strand, within AZOBR_RS19020 at 1037.768 kb on - strand at 1037.857 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,036,341 + -1.8 1,036,392 + -0.2 1,037,050 + +0.8 1,037,128 + AZOBR_RS19020 0.18 -1.8 1,037,128 + AZOBR_RS19020 0.18 +0.9 1,037,128 + AZOBR_RS19020 0.18 -0.8 1,037,129 - AZOBR_RS19020 0.18 +0.4 1,037,186 - AZOBR_RS19020 0.25 -2.0 1,037,579 - AZOBR_RS19020 0.74 +0.4 1,037,686 - AZOBR_RS19020 0.88 -2.2 1,037,768 - -1.0 1,037,857 + +0.8
Or see this region's nucleotide sequence