Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18535 and AZOBR_RS18540 are separated by 102 nucleotides AZOBR_RS18540 and AZOBR_RS18545 are separated by 194 nucleotides AZOBR_RS18545 and AZOBR_RS18550 are separated by 19 nucleotides
AZOBR_RS18535: AZOBR_RS18535 - LysR family transcriptional regulator, at 927,352 to 928,260
_RS18535
AZOBR_RS18540: AZOBR_RS18540 - endoribonuclease L-PSP, at 928,363 to 928,761
_RS18540
AZOBR_RS18545: AZOBR_RS18545 - putative two-component response regulator:antitermination factor NasT, at 928,956 to 929,573
_RS18545
AZOBR_RS18550: AZOBR_RS18550 - ABC transporter for nitrate, ATPase component <small>(from data)</small>, at 929,593 to 931,257
_RS18550
Position (kb) 928
929
930 Strain fitness (log2 ratio) -2
-1
0
1 at 928.324 kb on + strand at 928.325 kb on - strand at 928.325 kb on - strand at 928.423 kb on + strand, within AZOBR_RS18540 at 929.047 kb on + strand, within AZOBR_RS18545 at 929.660 kb on + strand at 929.661 kb on - strand at 929.664 kb on - strand at 929.725 kb on - strand at 930.026 kb on + strand, within AZOBR_RS18550 at 930.027 kb on - strand, within AZOBR_RS18550 at 930.027 kb on - strand, within AZOBR_RS18550 at 930.377 kb on + strand, within AZOBR_RS18550 at 930.378 kb on - strand, within AZOBR_RS18550 at 930.416 kb on + strand, within AZOBR_RS18550 at 930.417 kb on - strand, within AZOBR_RS18550
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 928,324 + +1.5 928,325 - -0.0 928,325 - -0.5 928,423 + AZOBR_RS18540 0.15 +0.1 929,047 + AZOBR_RS18545 0.15 -0.4 929,660 + +0.5 929,661 - +1.7 929,664 - -0.1 929,725 - -0.1 930,026 + AZOBR_RS18550 0.26 -1.8 930,027 - AZOBR_RS18550 0.26 +0.9 930,027 - AZOBR_RS18550 0.26 -0.3 930,377 + AZOBR_RS18550 0.47 +0.5 930,378 - AZOBR_RS18550 0.47 +1.0 930,416 + AZOBR_RS18550 0.49 -1.4 930,417 - AZOBR_RS18550 0.49 -0.3
Or see this region's nucleotide sequence