Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18210

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18205 and AZOBR_RS18210 are separated by 771 nucleotidesAZOBR_RS18210 and AZOBR_RS18215 are separated by 95 nucleotides AZOBR_RS18205: AZOBR_RS18205 - outer membrane efflux protein, at 846,643 to 847,959 _RS18205 AZOBR_RS18210: AZOBR_RS18210 - ATP-binding cassette subfamily C (fragment), at 848,731 to 849,657 _RS18210 AZOBR_RS18215: AZOBR_RS18215 - hypothetical protein, at 849,753 to 851,039 _RS18215 Position (kb) 848 849 850Strain fitness (log2 ratio) -2 -1 0 1 2at 848.073 kb on + strandat 848.074 kb on - strandat 848.945 kb on - strand, within AZOBR_RS18210at 849.488 kb on - strand, within AZOBR_RS18210at 849.906 kb on + strand, within AZOBR_RS18215at 849.906 kb on + strand, within AZOBR_RS18215at 849.906 kb on + strandat 849.907 kb on - strand, within AZOBR_RS18215at 849.907 kb on - strand, within AZOBR_RS18215at 850.112 kb on - strand, within AZOBR_RS18215at 850.112 kb on - strand, within AZOBR_RS18215at 850.488 kb on + strand, within AZOBR_RS18215

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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848,073 + +0.1
848,074 - +0.2
848,945 - AZOBR_RS18210 0.23 -0.1
849,488 - AZOBR_RS18210 0.82 +0.1
849,906 + AZOBR_RS18215 0.12 -0.7
849,906 + AZOBR_RS18215 0.12 +0.1
849,906 + +1.9
849,907 - AZOBR_RS18215 0.12 +1.1
849,907 - AZOBR_RS18215 0.12 -2.6
850,112 - AZOBR_RS18215 0.28 -0.6
850,112 - AZOBR_RS18215 0.28 +0.5
850,488 + AZOBR_RS18215 0.57 +1.0

Or see this region's nucleotide sequence