Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18170

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18165 and AZOBR_RS18170 are separated by 130 nucleotidesAZOBR_RS18170 and AZOBR_RS18175 are separated by 257 nucleotides AZOBR_RS18165: AZOBR_RS18165 - 2 5-dioxovalerate dehydrogenase, at 833,059 to 834,639 _RS18165 AZOBR_RS18170: AZOBR_RS18170 - sugar ABC transporter, at 834,770 to 836,005 _RS18170 AZOBR_RS18175: AZOBR_RS18175 - sugar ABC transporter, at 836,263 to 837,150 _RS18175 Position (kb) 834 835 836 837Strain fitness (log2 ratio) -3 -2 -1 0 1at 833.810 kb on - strand, within AZOBR_RS18165at 834.710 kb on + strandat 834.710 kb on + strandat 834.711 kb on - strandat 835.062 kb on - strand, within AZOBR_RS18170at 835.145 kb on + strand, within AZOBR_RS18170at 835.146 kb on - strand, within AZOBR_RS18170at 835.196 kb on + strand, within AZOBR_RS18170at 835.196 kb on + strand, within AZOBR_RS18170at 835.196 kb on + strand, within AZOBR_RS18170at 835.197 kb on - strand, within AZOBR_RS18170at 835.208 kb on + strand, within AZOBR_RS18170at 835.208 kb on + strand, within AZOBR_RS18170at 835.209 kb on - strand, within AZOBR_RS18170at 835.298 kb on + strand, within AZOBR_RS18170at 835.298 kb on + strand, within AZOBR_RS18170at 835.298 kb on + strand, within AZOBR_RS18170at 835.299 kb on - strand, within AZOBR_RS18170at 835.346 kb on + strand, within AZOBR_RS18170at 835.448 kb on + strand, within AZOBR_RS18170at 835.460 kb on + strand, within AZOBR_RS18170at 835.502 kb on + strand, within AZOBR_RS18170at 835.503 kb on - strand, within AZOBR_RS18170at 835.503 kb on - strand, within AZOBR_RS18170at 835.824 kb on - strand, within AZOBR_RS18170at 836.003 kb on + strandat 836.047 kb on - strandat 836.047 kb on - strandat 836.110 kb on - strandat 836.110 kb on - strandat 836.110 kb on - strandat 836.110 kb on - strandat 836.110 kb on - strandat 836.110 kb on - strandat 836.110 kb on - strandat 836.110 kb on - strandat 836.315 kb on - strandat 836.404 kb on + strand, within AZOBR_RS18175at 836.404 kb on + strand, within AZOBR_RS18175at 836.405 kb on - strand, within AZOBR_RS18175at 836.405 kb on - strand, within AZOBR_RS18175at 836.405 kb on - strand, within AZOBR_RS18175at 836.405 kb on - strand, within AZOBR_RS18175at 836.405 kb on - strand, within AZOBR_RS18175at 836.648 kb on - strand, within AZOBR_RS18175at 836.923 kb on - strand, within AZOBR_RS18175

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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833,810 - AZOBR_RS18165 0.48 +0.0
834,710 + -0.8
834,710 + -0.3
834,711 - +0.9
835,062 - AZOBR_RS18170 0.24 -0.1
835,145 + AZOBR_RS18170 0.30 +0.6
835,146 - AZOBR_RS18170 0.30 -2.6
835,196 + AZOBR_RS18170 0.34 +0.4
835,196 + AZOBR_RS18170 0.34 +0.1
835,196 + AZOBR_RS18170 0.34 +0.2
835,197 - AZOBR_RS18170 0.35 -3.0
835,208 + AZOBR_RS18170 0.35 -0.4
835,208 + AZOBR_RS18170 0.35 +0.7
835,209 - AZOBR_RS18170 0.36 -0.3
835,298 + AZOBR_RS18170 0.43 +0.7
835,298 + AZOBR_RS18170 0.43 -1.8
835,298 + AZOBR_RS18170 0.43 -2.6
835,299 - AZOBR_RS18170 0.43 -0.6
835,346 + AZOBR_RS18170 0.47 -0.7
835,448 + AZOBR_RS18170 0.55 +0.9
835,460 + AZOBR_RS18170 0.56 +0.4
835,502 + AZOBR_RS18170 0.59 +0.4
835,503 - AZOBR_RS18170 0.59 -0.4
835,503 - AZOBR_RS18170 0.59 -1.3
835,824 - AZOBR_RS18170 0.85 +1.5
836,003 + -0.3
836,047 - +1.2
836,047 - -1.9
836,110 - +1.6
836,110 - -0.6
836,110 - -0.6
836,110 - +0.5
836,110 - -1.6
836,110 - -1.0
836,110 - +0.0
836,110 - +1.4
836,315 - -2.0
836,404 + AZOBR_RS18175 0.16 -1.0
836,404 + AZOBR_RS18175 0.16 +0.4
836,405 - AZOBR_RS18175 0.16 +0.4
836,405 - AZOBR_RS18175 0.16 -0.0
836,405 - AZOBR_RS18175 0.16 -0.5
836,405 - AZOBR_RS18175 0.16 +0.7
836,405 - AZOBR_RS18175 0.16 +0.0
836,648 - AZOBR_RS18175 0.43 -1.3
836,923 - AZOBR_RS18175 0.74 -0.2

Or see this region's nucleotide sequence