Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS16990 and AZOBR_RS16995 are separated by 279 nucleotides AZOBR_RS16995 and AZOBR_RS17000 are separated by 68 nucleotides AZOBR_RS17000 and AZOBR_RS17005 are separated by 298 nucleotides
AZOBR_RS16990: AZOBR_RS16990 - regulator, at 567,209 to 567,643
_RS16990
AZOBR_RS16995: AZOBR_RS16995 - hydrolase, at 567,923 to 568,471
_RS16995
AZOBR_RS17000: AZOBR_RS17000 - 1-deoxy-D-xylulose-5-phosphate synthase, at 568,540 to 570,471
_RS17000
AZOBR_RS17005: AZOBR_RS17005 - radical SAM protein, at 570,770 to 571,897
_RS17005
Position (kb) 568
569
570
571 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 567.698 kb on - strand at 567.750 kb on + strand at 568.035 kb on + strand, within AZOBR_RS16995 at 568.035 kb on + strand, within AZOBR_RS16995 at 568.035 kb on + strand, within AZOBR_RS16995 at 568.036 kb on - strand, within AZOBR_RS16995 at 568.036 kb on - strand, within AZOBR_RS16995 at 568.036 kb on - strand, within AZOBR_RS16995 at 568.088 kb on + strand, within AZOBR_RS16995 at 568.427 kb on + strand at 568.427 kb on + strand at 568.428 kb on - strand at 568.428 kb on - strand at 568.428 kb on - strand at 568.428 kb on - strand at 568.428 kb on - strand at 569.768 kb on + strand, within AZOBR_RS17000 at 569.883 kb on - strand, within AZOBR_RS17000 at 569.985 kb on - strand, within AZOBR_RS17000 at 570.122 kb on + strand, within AZOBR_RS17000 at 570.122 kb on + strand, within AZOBR_RS17000 at 570.135 kb on + strand, within AZOBR_RS17000 at 570.136 kb on - strand, within AZOBR_RS17000 at 570.136 kb on - strand, within AZOBR_RS17000 at 570.136 kb on - strand, within AZOBR_RS17000 at 570.219 kb on - strand, within AZOBR_RS17000 at 570.272 kb on + strand, within AZOBR_RS17000 at 570.272 kb on + strand, within AZOBR_RS17000 at 570.272 kb on + strand, within AZOBR_RS17000 at 570.272 kb on + strand, within AZOBR_RS17000 at 570.272 kb on + strand, within AZOBR_RS17000 at 570.272 kb on + strand, within AZOBR_RS17000 at 570.272 kb on + strand, within AZOBR_RS17000 at 570.273 kb on - strand, within AZOBR_RS17000 at 570.273 kb on - strand, within AZOBR_RS17000 at 570.273 kb on - strand, within AZOBR_RS17000 at 570.491 kb on - strand at 570.502 kb on + strand at 570.503 kb on - strand at 570.503 kb on - strand at 570.503 kb on - strand at 570.610 kb on + strand at 570.611 kb on - strand at 570.611 kb on - strand at 570.615 kb on + strand at 570.615 kb on + strand at 570.616 kb on - strand at 570.620 kb on + strand at 570.620 kb on + strand at 570.621 kb on - strand at 570.621 kb on - strand at 570.621 kb on - strand at 570.621 kb on - strand at 570.625 kb on + strand at 570.625 kb on + strand at 570.625 kb on + strand at 570.626 kb on - strand at 570.809 kb on + strand at 570.809 kb on + strand at 570.810 kb on - strand at 570.810 kb on - strand at 570.917 kb on + strand, within AZOBR_RS17005 at 571.079 kb on + strand, within AZOBR_RS17005 at 571.079 kb on + strand, within AZOBR_RS17005 at 571.211 kb on + strand, within AZOBR_RS17005 at 571.211 kb on + strand, within AZOBR_RS17005 at 571.370 kb on + strand, within AZOBR_RS17005 at 571.376 kb on + strand, within AZOBR_RS17005
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 567,698 - +0.0 567,750 + +0.4 568,035 + AZOBR_RS16995 0.20 -2.1 568,035 + AZOBR_RS16995 0.20 -0.2 568,035 + AZOBR_RS16995 0.20 -1.5 568,036 - AZOBR_RS16995 0.21 +0.5 568,036 - AZOBR_RS16995 0.21 +0.2 568,036 - AZOBR_RS16995 0.21 +0.5 568,088 + AZOBR_RS16995 0.30 +0.5 568,427 + -0.0 568,427 + -0.9 568,428 - -0.6 568,428 - -1.0 568,428 - +0.9 568,428 - -3.0 568,428 - -1.2 569,768 + AZOBR_RS17000 0.64 +0.1 569,883 - AZOBR_RS17000 0.70 -0.1 569,985 - AZOBR_RS17000 0.75 +0.3 570,122 + AZOBR_RS17000 0.82 +0.5 570,122 + AZOBR_RS17000 0.82 -2.0 570,135 + AZOBR_RS17000 0.83 -3.7 570,136 - AZOBR_RS17000 0.83 +0.1 570,136 - AZOBR_RS17000 0.83 -0.4 570,136 - AZOBR_RS17000 0.83 -2.1 570,219 - AZOBR_RS17000 0.87 -2.0 570,272 + AZOBR_RS17000 0.90 -1.4 570,272 + AZOBR_RS17000 0.90 -0.9 570,272 + AZOBR_RS17000 0.90 -0.4 570,272 + AZOBR_RS17000 0.90 -0.0 570,272 + AZOBR_RS17000 0.90 +0.5 570,272 + AZOBR_RS17000 0.90 -1.9 570,272 + AZOBR_RS17000 0.90 +0.2 570,273 - AZOBR_RS17000 0.90 -2.4 570,273 - AZOBR_RS17000 0.90 +1.8 570,273 - AZOBR_RS17000 0.90 -0.0 570,491 - +1.3 570,502 + +1.0 570,503 - -0.1 570,503 - -0.4 570,503 - +0.0 570,610 + -0.1 570,611 - +0.0 570,611 - -0.4 570,615 + +1.0 570,615 + +0.8 570,616 - +0.5 570,620 + -0.5 570,620 + +1.4 570,621 - +0.8 570,621 - +0.5 570,621 - -0.7 570,621 - +1.8 570,625 + +0.0 570,625 + -0.1 570,625 + -0.5 570,626 - -0.2 570,809 + -0.3 570,809 + +0.4 570,810 - +0.3 570,810 - +0.5 570,917 + AZOBR_RS17005 0.13 -0.5 571,079 + AZOBR_RS17005 0.27 +0.1 571,079 + AZOBR_RS17005 0.27 -0.2 571,211 + AZOBR_RS17005 0.39 +0.2 571,211 + AZOBR_RS17005 0.39 -0.5 571,370 + AZOBR_RS17005 0.53 +0.4 571,376 + AZOBR_RS17005 0.54 +0.2
Or see this region's nucleotide sequence