Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS16500 and AZOBR_RS16505 are separated by 290 nucleotides AZOBR_RS16505 and AZOBR_RS16510 are separated by 135 nucleotides
AZOBR_RS16500: AZOBR_RS16500 - C4-dicarboxylate ABC transporter permease, at 451,349 to 453,370
_RS16500
AZOBR_RS16505: AZOBR_RS16505 - hypothetical protein, at 453,661 to 454,647
_RS16505
AZOBR_RS16510: AZOBR_RS16510 - S-formylglutathione hydrolase, at 454,783 to 455,646
_RS16510
Position (kb) 453
454
455 Strain fitness (log2 ratio) -2
-1
0
1
2 at 452.751 kb on + strand, within AZOBR_RS16500 at 452.751 kb on + strand, within AZOBR_RS16500 at 452.751 kb on + strand, within AZOBR_RS16500 at 452.752 kb on - strand, within AZOBR_RS16500 at 452.752 kb on - strand, within AZOBR_RS16500 at 452.752 kb on - strand, within AZOBR_RS16500 at 452.802 kb on + strand, within AZOBR_RS16500 at 452.802 kb on + strand, within AZOBR_RS16500 at 452.803 kb on - strand, within AZOBR_RS16500 at 452.803 kb on - strand, within AZOBR_RS16500 at 452.803 kb on - strand, within AZOBR_RS16500 at 452.803 kb on - strand, within AZOBR_RS16500 at 452.880 kb on + strand, within AZOBR_RS16500 at 452.880 kb on + strand, within AZOBR_RS16500 at 453.237 kb on + strand at 453.238 kb on - strand at 453.238 kb on - strand at 453.617 kb on - strand at 453.617 kb on - strand at 453.617 kb on - strand at 453.686 kb on + strand at 453.687 kb on - strand at 453.803 kb on + strand, within AZOBR_RS16505 at 453.824 kb on + strand, within AZOBR_RS16505 at 453.824 kb on + strand, within AZOBR_RS16505 at 453.825 kb on - strand, within AZOBR_RS16505 at 453.905 kb on + strand, within AZOBR_RS16505 at 453.905 kb on + strand, within AZOBR_RS16505 at 453.906 kb on - strand, within AZOBR_RS16505 at 453.906 kb on - strand, within AZOBR_RS16505 at 453.906 kb on - strand, within AZOBR_RS16505 at 454.055 kb on + strand, within AZOBR_RS16505 at 454.055 kb on + strand, within AZOBR_RS16505 at 454.056 kb on - strand, within AZOBR_RS16505 at 454.109 kb on + strand, within AZOBR_RS16505 at 454.109 kb on + strand, within AZOBR_RS16505 at 454.514 kb on + strand, within AZOBR_RS16505 at 454.514 kb on + strand, within AZOBR_RS16505 at 454.515 kb on - strand, within AZOBR_RS16505 at 454.515 kb on - strand, within AZOBR_RS16505 at 454.735 kb on + strand at 454.736 kb on - strand at 454.736 kb on - strand at 454.764 kb on + strand at 454.765 kb on - strand at 454.850 kb on + strand at 454.850 kb on + strand at 454.851 kb on - strand at 455.043 kb on - strand, within AZOBR_RS16510 at 455.258 kb on + strand, within AZOBR_RS16510 at 455.258 kb on + strand, within AZOBR_RS16510 at 455.258 kb on + strand, within AZOBR_RS16510 at 455.258 kb on + strand, within AZOBR_RS16510 at 455.258 kb on + strand, within AZOBR_RS16510 at 455.259 kb on - strand, within AZOBR_RS16510 at 455.259 kb on - strand, within AZOBR_RS16510 at 455.259 kb on - strand, within AZOBR_RS16510 at 455.483 kb on + strand, within AZOBR_RS16510 at 455.537 kb on + strand, within AZOBR_RS16510 at 455.537 kb on + strand, within AZOBR_RS16510 at 455.538 kb on - strand, within AZOBR_RS16510 at 455.538 kb on - strand, within AZOBR_RS16510
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 452,751 + AZOBR_RS16500 0.69 -0.9 452,751 + AZOBR_RS16500 0.69 +0.4 452,751 + AZOBR_RS16500 0.69 +0.2 452,752 - AZOBR_RS16500 0.69 -2.1 452,752 - AZOBR_RS16500 0.69 -0.1 452,752 - AZOBR_RS16500 0.69 -0.4 452,802 + AZOBR_RS16500 0.72 +1.3 452,802 + AZOBR_RS16500 0.72 -1.0 452,803 - AZOBR_RS16500 0.72 -1.0 452,803 - AZOBR_RS16500 0.72 -0.2 452,803 - AZOBR_RS16500 0.72 -0.3 452,803 - AZOBR_RS16500 0.72 -1.4 452,880 + AZOBR_RS16500 0.76 -1.3 452,880 + AZOBR_RS16500 0.76 -0.9 453,237 + -0.2 453,238 - +1.4 453,238 - +0.5 453,617 - -0.6 453,617 - -0.3 453,617 - +0.3 453,686 + +0.2 453,687 - -0.5 453,803 + AZOBR_RS16505 0.14 +1.4 453,824 + AZOBR_RS16505 0.17 -1.0 453,824 + AZOBR_RS16505 0.17 +0.7 453,825 - AZOBR_RS16505 0.17 -0.2 453,905 + AZOBR_RS16505 0.25 +0.9 453,905 + AZOBR_RS16505 0.25 -0.4 453,906 - AZOBR_RS16505 0.25 +0.1 453,906 - AZOBR_RS16505 0.25 +0.6 453,906 - AZOBR_RS16505 0.25 -1.9 454,055 + AZOBR_RS16505 0.40 -0.2 454,055 + AZOBR_RS16505 0.40 -0.2 454,056 - AZOBR_RS16505 0.40 -1.7 454,109 + AZOBR_RS16505 0.45 -0.9 454,109 + AZOBR_RS16505 0.45 -0.1 454,514 + AZOBR_RS16505 0.86 +0.4 454,514 + AZOBR_RS16505 0.86 +0.3 454,515 - AZOBR_RS16505 0.87 -2.4 454,515 - AZOBR_RS16505 0.87 -2.6 454,735 + +0.7 454,736 - +2.0 454,736 - -0.6 454,764 + -0.9 454,765 - +1.4 454,850 + +0.0 454,850 + +0.2 454,851 - -0.2 455,043 - AZOBR_RS16510 0.30 -1.9 455,258 + AZOBR_RS16510 0.55 -2.6 455,258 + AZOBR_RS16510 0.55 -2.1 455,258 + AZOBR_RS16510 0.55 -0.4 455,258 + AZOBR_RS16510 0.55 +0.4 455,258 + AZOBR_RS16510 0.55 +1.1 455,259 - AZOBR_RS16510 0.55 +0.3 455,259 - AZOBR_RS16510 0.55 -0.2 455,259 - AZOBR_RS16510 0.55 -0.7 455,483 + AZOBR_RS16510 0.81 -0.6 455,537 + AZOBR_RS16510 0.87 +1.0 455,537 + AZOBR_RS16510 0.87 -0.6 455,538 - AZOBR_RS16510 0.87 +0.2 455,538 - AZOBR_RS16510 0.87 -0.5
Or see this region's nucleotide sequence