Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS15765

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS15760 and AZOBR_RS15765 overlap by 4 nucleotidesAZOBR_RS15765 and AZOBR_RS15770 are separated by 17 nucleotides AZOBR_RS15760: AZOBR_RS15760 - ATP-binding protein, at 286,546 to 287,484 _RS15760 AZOBR_RS15765: AZOBR_RS15765 - osmoprotectant uptake system permease, at 287,481 to 288,653 _RS15765 AZOBR_RS15770: AZOBR_RS15770 - osmoprotectant uptake system substrate-binding protein, at 288,671 to 289,591 _RS15770 Position (kb) 287 288 289Strain fitness (log2 ratio) -2 -1 0 1at 287.249 kb on + strand, within AZOBR_RS15760at 287.249 kb on + strand, within AZOBR_RS15760at 287.855 kb on - strand, within AZOBR_RS15765at 288.142 kb on + strand, within AZOBR_RS15765at 288.418 kb on + strand, within AZOBR_RS15765at 288.418 kb on + strand, within AZOBR_RS15765at 288.861 kb on + strand, within AZOBR_RS15770at 288.861 kb on + strand, within AZOBR_RS15770at 288.862 kb on - strand, within AZOBR_RS15770at 289.045 kb on - strand, within AZOBR_RS15770at 289.275 kb on + strand, within AZOBR_RS15770at 289.344 kb on + strand, within AZOBR_RS15770

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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287,249 + AZOBR_RS15760 0.75 -1.7
287,249 + AZOBR_RS15760 0.75 -2.2
287,855 - AZOBR_RS15765 0.32 +0.6
288,142 + AZOBR_RS15765 0.56 -0.7
288,418 + AZOBR_RS15765 0.80 -2.5
288,418 + AZOBR_RS15765 0.80 -0.4
288,861 + AZOBR_RS15770 0.21 +0.6
288,861 + AZOBR_RS15770 0.21 -2.2
288,862 - AZOBR_RS15770 0.21 +0.2
289,045 - AZOBR_RS15770 0.41 +0.5
289,275 + AZOBR_RS15770 0.66 -0.7
289,344 + AZOBR_RS15770 0.73 +0.9

Or see this region's nucleotide sequence