Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS14865 and AZOBR_RS14870 are separated by 85 nucleotides AZOBR_RS14870 and AZOBR_RS14875 are separated by 129 nucleotides AZOBR_RS14875 and AZOBR_RS14880 are separated by 100 nucleotides
AZOBR_RS14865: AZOBR_RS14865 - aminopeptidase N, at 107,728 to 110,385
_RS14865
AZOBR_RS14870: AZOBR_RS14870 - cytochrome C transmembrane protein, at 110,471 to 110,851
_RS14870
AZOBR_RS14875: AZOBR_RS14875 - carbon monoxide dehydrogenase subunit G, at 110,981 to 111,643
_RS14875
AZOBR_RS14880: AZOBR_RS14880 - hypothetical protein, at 111,744 to 112,205
_RS14880
Position (kb)
110
111 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 109.631 kb on - strand, within AZOBR_RS14865 at 109.874 kb on - strand, within AZOBR_RS14865 at 109.874 kb on - strand, within AZOBR_RS14865 at 109.969 kb on + strand, within AZOBR_RS14865 at 109.969 kb on + strand, within AZOBR_RS14865 at 110.111 kb on - strand, within AZOBR_RS14865 at 110.111 kb on - strand, within AZOBR_RS14865 at 110.580 kb on + strand, within AZOBR_RS14870 at 110.580 kb on + strand, within AZOBR_RS14870 at 110.581 kb on - strand, within AZOBR_RS14870 at 110.840 kb on - strand at 110.840 kb on - strand at 110.840 kb on - strand at 110.914 kb on + strand at 110.914 kb on + strand at 110.914 kb on + strand at 110.914 kb on + strand at 110.915 kb on - strand at 110.915 kb on - strand at 110.915 kb on - strand at 110.929 kb on + strand at 110.930 kb on - strand at 111.045 kb on + strand at 111.045 kb on + strand at 111.046 kb on - strand at 111.046 kb on - strand at 111.423 kb on + strand, within AZOBR_RS14875 at 111.423 kb on + strand, within AZOBR_RS14875 at 111.424 kb on - strand, within AZOBR_RS14875 at 111.424 kb on - strand, within AZOBR_RS14875 at 111.680 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 109,631 - AZOBR_RS14865 0.72 -0.5 109,874 - AZOBR_RS14865 0.81 +0.3 109,874 - AZOBR_RS14865 0.81 -0.4 109,969 + AZOBR_RS14865 0.84 +0.1 109,969 + AZOBR_RS14865 0.84 -1.0 110,111 - AZOBR_RS14865 0.90 -0.2 110,111 - AZOBR_RS14865 0.90 -1.3 110,580 + AZOBR_RS14870 0.29 +0.7 110,580 + AZOBR_RS14870 0.29 +0.4 110,581 - AZOBR_RS14870 0.29 +1.8 110,840 - -1.8 110,840 - +1.1 110,840 - +1.9 110,914 + -0.8 110,914 + -0.6 110,914 + -1.2 110,914 + +0.3 110,915 - +1.0 110,915 - -0.4 110,915 - +0.7 110,929 + -0.9 110,930 - -0.6 111,045 + +0.4 111,045 + +1.2 111,046 - -3.8 111,046 - +3.3 111,423 + AZOBR_RS14875 0.67 -0.9 111,423 + AZOBR_RS14875 0.67 -0.1 111,424 - AZOBR_RS14875 0.67 -2.5 111,424 - AZOBR_RS14875 0.67 +0.2 111,680 + -0.9
Or see this region's nucleotide sequence