Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS14480 and AZOBR_RS14485 overlap by 4 nucleotides AZOBR_RS14485 and AZOBR_RS14490 are separated by 91 nucleotides AZOBR_RS14490 and AZOBR_RS14495 are separated by 72 nucleotides AZOBR_RS14495 and AZOBR_RS14500 are separated by 176 nucleotides
AZOBR_RS14480: AZOBR_RS14480 - hypothetical protein, at 20,369 to 20,905
_RS14480
AZOBR_RS14485: AZOBR_RS14485 - inositol-1-monophosphatase, at 20,902 to 21,714
_RS14485
AZOBR_RS14490: AZOBR_RS14490 - hypothetical protein, at 21,806 to 22,114
_RS14490
AZOBR_RS14495: AZOBR_RS14495 - hypothetical protein, at 22,187 to 22,606
_RS14495
AZOBR_RS14500: AZOBR_RS14500 - nucleoside triphosphate pyrophosphohydrolase, at 22,783 to 23,592
_RS14500
Position (kb)
21
22
23 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 21.287 kb on - strand, within AZOBR_RS14485 at 21.499 kb on + strand, within AZOBR_RS14485 at 21.538 kb on + strand, within AZOBR_RS14485 at 21.539 kb on - strand, within AZOBR_RS14485 at 21.602 kb on - strand, within AZOBR_RS14485 at 21.628 kb on + strand, within AZOBR_RS14485 at 21.794 kb on + strand at 21.794 kb on + strand at 21.794 kb on + strand at 21.794 kb on + strand at 21.794 kb on + strand at 21.794 kb on + strand at 21.795 kb on - strand at 21.795 kb on - strand at 21.796 kb on + strand at 21.797 kb on - strand at 21.797 kb on - strand at 22.201 kb on + strand at 22.201 kb on + strand at 22.202 kb on - strand at 22.427 kb on + strand, within AZOBR_RS14495 at 22.457 kb on + strand, within AZOBR_RS14495 at 22.457 kb on + strand, within AZOBR_RS14495 at 22.458 kb on - strand, within AZOBR_RS14495 at 22.739 kb on - strand at 22.870 kb on + strand, within AZOBR_RS14500 at 22.870 kb on + strand, within AZOBR_RS14500 at 22.871 kb on - strand, within AZOBR_RS14500 at 22.906 kb on + strand, within AZOBR_RS14500 at 22.906 kb on + strand, within AZOBR_RS14500 at 22.907 kb on - strand, within AZOBR_RS14500 at 22.907 kb on - strand, within AZOBR_RS14500 at 22.987 kb on + strand, within AZOBR_RS14500 at 22.988 kb on - strand, within AZOBR_RS14500 at 22.988 kb on - strand, within AZOBR_RS14500 at 22.988 kb on - strand, within AZOBR_RS14500 at 22.991 kb on - strand, within AZOBR_RS14500 at 22.991 kb on - strand, within AZOBR_RS14500
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 21,287 - AZOBR_RS14485 0.47 +0.1 21,499 + AZOBR_RS14485 0.73 -1.4 21,538 + AZOBR_RS14485 0.78 +0.4 21,539 - AZOBR_RS14485 0.78 +1.3 21,602 - AZOBR_RS14485 0.86 -0.5 21,628 + AZOBR_RS14485 0.89 +0.6 21,794 + +0.7 21,794 + -0.4 21,794 + -0.5 21,794 + -0.6 21,794 + -0.7 21,794 + +0.7 21,795 - +1.1 21,795 - -0.0 21,796 + +0.6 21,797 - +0.8 21,797 - +0.6 22,201 + +0.0 22,201 + -0.6 22,202 - +0.2 22,427 + AZOBR_RS14495 0.57 +0.7 22,457 + AZOBR_RS14495 0.64 +1.1 22,457 + AZOBR_RS14495 0.64 -1.1 22,458 - AZOBR_RS14495 0.65 -1.0 22,739 - -0.5 22,870 + AZOBR_RS14500 0.11 +0.2 22,870 + AZOBR_RS14500 0.11 -0.7 22,871 - AZOBR_RS14500 0.11 +1.6 22,906 + AZOBR_RS14500 0.15 +0.5 22,906 + AZOBR_RS14500 0.15 -2.7 22,907 - AZOBR_RS14500 0.15 +1.3 22,907 - AZOBR_RS14500 0.15 -1.2 22,987 + AZOBR_RS14500 0.25 +1.6 22,988 - AZOBR_RS14500 0.25 +0.7 22,988 - AZOBR_RS14500 0.25 +0.7 22,988 - AZOBR_RS14500 0.25 -0.7 22,991 - AZOBR_RS14500 0.26 +1.8 22,991 - AZOBR_RS14500 0.26 +1.7
Or see this region's nucleotide sequence