Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS14450 and AZOBR_RS14455 are separated by 42 nucleotides AZOBR_RS14455 and AZOBR_RS14460 overlap by 4 nucleotides AZOBR_RS14460 and AZOBR_RS14465 are separated by 95 nucleotides AZOBR_RS14465 and AZOBR_RS14470 overlap by 14 nucleotides
AZOBR_RS14450: AZOBR_RS14450 - potassium transporter TrkA, at 15,187 to 16,563
_RS14450
AZOBR_RS14455: AZOBR_RS14455 - D-amino acid aminotransferase, at 16,606 to 17,469
_RS14455
AZOBR_RS14460: AZOBR_RS14460 - HAD family hydrolase, at 17,466 to 18,164
_RS14460
AZOBR_RS14465: AZOBR_RS14465 - RNA-binding protein Hfq, at 18,260 to 18,508
_RS14465
AZOBR_RS14470: AZOBR_RS14470 - GTPase HflX, at 18,495 to 19,820
_RS14470
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 16.621 kb on + strand at 16.621 kb on + strand at 16.621 kb on + strand at 16.621 kb on + strand at 16.621 kb on + strand at 16.622 kb on - strand at 16.637 kb on - strand at 16.873 kb on + strand, within AZOBR_RS14455 at 16.874 kb on - strand, within AZOBR_RS14455 at 16.874 kb on - strand, within AZOBR_RS14455 at 17.443 kb on + strand at 17.524 kb on - strand at 17.709 kb on + strand at 17.710 kb on - strand, within AZOBR_RS14460 at 18.043 kb on + strand, within AZOBR_RS14460 at 18.046 kb on + strand, within AZOBR_RS14460 at 18.162 kb on + strand at 18.216 kb on + strand at 18.871 kb on + strand, within AZOBR_RS14470
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 16,621 + +1.1 16,621 + +0.6 16,621 + +0.3 16,621 + -0.4 16,621 + +0.1 16,622 - -0.0 16,637 - -0.3 16,873 + AZOBR_RS14455 0.31 -2.1 16,874 - AZOBR_RS14455 0.31 +0.8 16,874 - AZOBR_RS14455 0.31 +2.1 17,443 + +0.7 17,524 - +0.1 17,709 + -0.2 17,710 - AZOBR_RS14460 0.35 +1.1 18,043 + AZOBR_RS14460 0.83 -0.6 18,046 + AZOBR_RS14460 0.83 +1.7 18,162 + -0.4 18,216 + +0.0 18,871 + AZOBR_RS14470 0.28 +1.4
Or see this region's nucleotide sequence