Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS12025 and AZOBR_RS12030 are separated by 126 nucleotides AZOBR_RS12030 and AZOBR_RS12035 are separated by 36 nucleotides AZOBR_RS12035 and AZOBR_RS12040 are separated by 186 nucleotides AZOBR_RS12040 and AZOBR_RS12045 are separated by 191 nucleotides
AZOBR_RS12025: AZOBR_RS12025 - 3-dehydroquinate dehydratase, at 2,527,023 to 2,527,472
_RS12025
AZOBR_RS12030: AZOBR_RS12030 - amino acid ABC transporter substrate-binding protein, at 2,527,599 to 2,528,378
_RS12030
AZOBR_RS12035: AZOBR_RS12035 - hypothetical protein, at 2,528,415 to 2,529,878
_RS12035
AZOBR_RS12040: AZOBR_RS12040 - hypothetical protein, at 2,530,065 to 2,530,616
_RS12040
AZOBR_RS12045: AZOBR_RS12045 - exported protein of unknown function, at 2,530,808 to 2,531,170
_RS12045
Position (kb)
2528
2529
2530 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2527.557 kb on - strand at 2527.747 kb on + strand, within AZOBR_RS12030 at 2528.020 kb on + strand, within AZOBR_RS12030 at 2528.020 kb on + strand, within AZOBR_RS12030 at 2528.020 kb on + strand, within AZOBR_RS12030 at 2528.020 kb on + strand, within AZOBR_RS12030 at 2528.020 kb on + strand, within AZOBR_RS12030 at 2528.021 kb on - strand, within AZOBR_RS12030 at 2528.093 kb on - strand, within AZOBR_RS12030 at 2529.091 kb on + strand, within AZOBR_RS12035 at 2529.091 kb on + strand, within AZOBR_RS12035 at 2529.091 kb on + strand, within AZOBR_RS12035 at 2529.100 kb on + strand, within AZOBR_RS12035 at 2529.100 kb on + strand, within AZOBR_RS12035 at 2529.100 kb on + strand, within AZOBR_RS12035 at 2529.101 kb on - strand, within AZOBR_RS12035 at 2529.208 kb on + strand, within AZOBR_RS12035 at 2529.208 kb on + strand, within AZOBR_RS12035 at 2529.208 kb on + strand, within AZOBR_RS12035 at 2529.209 kb on - strand, within AZOBR_RS12035 at 2529.209 kb on - strand, within AZOBR_RS12035 at 2529.209 kb on - strand, within AZOBR_RS12035 at 2529.452 kb on - strand, within AZOBR_RS12035 at 2529.452 kb on - strand, within AZOBR_RS12035 at 2529.511 kb on + strand, within AZOBR_RS12035 at 2529.511 kb on + strand, within AZOBR_RS12035 at 2529.939 kb on + strand at 2530.028 kb on - strand at 2530.221 kb on + strand, within AZOBR_RS12040 at 2530.455 kb on + strand, within AZOBR_RS12040 at 2530.455 kb on + strand, within AZOBR_RS12040 at 2530.456 kb on - strand, within AZOBR_RS12040 at 2530.729 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,527,557 - +1.2 2,527,747 + AZOBR_RS12030 0.19 -0.9 2,528,020 + AZOBR_RS12030 0.54 -0.1 2,528,020 + AZOBR_RS12030 0.54 -0.5 2,528,020 + AZOBR_RS12030 0.54 -0.8 2,528,020 + AZOBR_RS12030 0.54 -0.9 2,528,020 + AZOBR_RS12030 0.54 -4.9 2,528,021 - AZOBR_RS12030 0.54 -0.3 2,528,093 - AZOBR_RS12030 0.63 +0.0 2,529,091 + AZOBR_RS12035 0.46 +0.3 2,529,091 + AZOBR_RS12035 0.46 +0.1 2,529,091 + AZOBR_RS12035 0.46 -0.9 2,529,100 + AZOBR_RS12035 0.47 +0.1 2,529,100 + AZOBR_RS12035 0.47 -0.4 2,529,100 + AZOBR_RS12035 0.47 -1.2 2,529,101 - AZOBR_RS12035 0.47 +0.2 2,529,208 + AZOBR_RS12035 0.54 -2.0 2,529,208 + AZOBR_RS12035 0.54 -0.5 2,529,208 + AZOBR_RS12035 0.54 +1.0 2,529,209 - AZOBR_RS12035 0.54 +0.4 2,529,209 - AZOBR_RS12035 0.54 -0.6 2,529,209 - AZOBR_RS12035 0.54 +0.3 2,529,452 - AZOBR_RS12035 0.71 -0.1 2,529,452 - AZOBR_RS12035 0.71 -0.1 2,529,511 + AZOBR_RS12035 0.75 +0.4 2,529,511 + AZOBR_RS12035 0.75 -0.1 2,529,939 + +0.1 2,530,028 - -0.0 2,530,221 + AZOBR_RS12040 0.28 +0.7 2,530,455 + AZOBR_RS12040 0.71 -0.6 2,530,455 + AZOBR_RS12040 0.71 -0.5 2,530,456 - AZOBR_RS12040 0.71 -1.3 2,530,729 - -0.3
Or see this region's nucleotide sequence