Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS11255 and AZOBR_RS11260 are separated by 110 nucleotides AZOBR_RS11260 and AZOBR_RS11265 overlap by 8 nucleotides AZOBR_RS11265 and AZOBR_RS11270 are separated by 614 nucleotides
AZOBR_RS11255: AZOBR_RS11255 - flagellar basal body P-ring biosynthesis protein FlgA, at 2,367,103 to 2,368,236
_RS11255
AZOBR_RS11260: AZOBR_RS11260 - flagellar rod assembly protein FlgJ, at 2,368,347 to 2,368,643
_RS11260
AZOBR_RS11265: AZOBR_RS11265 - flagellar basal-body protein, at 2,368,636 to 2,369,151
_RS11265
AZOBR_RS11270: AZOBR_RS11270 - hypothetical protein, at 2,369,766 to 2,371,418
_RS11270
Position (kb)
2368
2369
2370 Strain fitness (log2 ratio)
-2
-1
0
1 at 2368.133 kb on + strand at 2368.242 kb on - strand at 2368.602 kb on + strand, within AZOBR_RS11260 at 2368.847 kb on - strand, within AZOBR_RS11265 at 2368.945 kb on + strand, within AZOBR_RS11265 at 2369.063 kb on - strand, within AZOBR_RS11265 at 2369.096 kb on - strand, within AZOBR_RS11265 at 2369.096 kb on - strand, within AZOBR_RS11265 at 2369.096 kb on - strand, within AZOBR_RS11265 at 2369.096 kb on - strand, within AZOBR_RS11265 at 2369.096 kb on - strand, within AZOBR_RS11265 at 2369.096 kb on - strand, within AZOBR_RS11265 at 2369.327 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,368,133 + -0.5 2,368,242 - -2.2 2,368,602 + AZOBR_RS11260 0.86 -0.4 2,368,847 - AZOBR_RS11265 0.41 -1.4 2,368,945 + AZOBR_RS11265 0.60 -2.2 2,369,063 - AZOBR_RS11265 0.83 -0.6 2,369,096 - AZOBR_RS11265 0.89 -0.7 2,369,096 - AZOBR_RS11265 0.89 +0.4 2,369,096 - AZOBR_RS11265 0.89 -0.1 2,369,096 - AZOBR_RS11265 0.89 -2.1 2,369,096 - AZOBR_RS11265 0.89 +0.3 2,369,096 - AZOBR_RS11265 0.89 -1.4 2,369,327 + -0.1
Or see this region's nucleotide sequence