Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS10730 and AZOBR_RS10735 are separated by 41 nucleotides AZOBR_RS10735 and AZOBR_RS10740 are separated by 9 nucleotides AZOBR_RS10740 and AZOBR_RS10745 are separated by 218 nucleotides AZOBR_RS10745 and AZOBR_RS10750 are separated by 57 nucleotides
AZOBR_RS10730: AZOBR_RS10730 - chorismate synthase, at 2,254,701 to 2,255,777
_RS10730
AZOBR_RS10735: AZOBR_RS10735 - hypothetical protein, at 2,255,819 to 2,256,352
_RS10735
AZOBR_RS10740: AZOBR_RS10740 - regulator, at 2,256,362 to 2,257,456
_RS10740
AZOBR_RS10745: AZOBR_RS10745 - alkylhydroperoxidase, at 2,257,675 to 2,258,247
_RS10745
AZOBR_RS10750: AZOBR_RS10750 - protease IV, at 2,258,305 to 2,260,056
_RS10750
Position (kb)
2256
2257
2258 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2255.927 kb on + strand, within AZOBR_RS10735 at 2255.928 kb on - strand, within AZOBR_RS10735 at 2256.339 kb on + strand at 2256.340 kb on - strand at 2256.561 kb on + strand, within AZOBR_RS10740 at 2256.562 kb on - strand, within AZOBR_RS10740 at 2256.990 kb on + strand, within AZOBR_RS10740 at 2257.008 kb on + strand, within AZOBR_RS10740 at 2257.116 kb on + strand, within AZOBR_RS10740 at 2257.117 kb on - strand, within AZOBR_RS10740 at 2257.843 kb on + strand, within AZOBR_RS10745 at 2257.844 kb on - strand, within AZOBR_RS10745 at 2257.930 kb on + strand, within AZOBR_RS10745 at 2257.930 kb on + strand, within AZOBR_RS10745 at 2257.930 kb on + strand, within AZOBR_RS10745 at 2257.930 kb on + strand, within AZOBR_RS10745 at 2257.931 kb on - strand, within AZOBR_RS10745 at 2257.931 kb on - strand, within AZOBR_RS10745 at 2257.931 kb on - strand, within AZOBR_RS10745 at 2257.934 kb on - strand, within AZOBR_RS10745 at 2258.173 kb on + strand, within AZOBR_RS10745 at 2258.173 kb on + strand, within AZOBR_RS10745 at 2258.173 kb on + strand, within AZOBR_RS10745 at 2258.174 kb on - strand, within AZOBR_RS10745 at 2258.174 kb on - strand, within AZOBR_RS10745 at 2258.174 kb on - strand, within AZOBR_RS10745 at 2258.227 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,255,927 + AZOBR_RS10735 0.20 -0.3 2,255,928 - AZOBR_RS10735 0.20 -1.0 2,256,339 + -1.1 2,256,340 - +0.7 2,256,561 + AZOBR_RS10740 0.18 +0.4 2,256,562 - AZOBR_RS10740 0.18 -0.8 2,256,990 + AZOBR_RS10740 0.57 -1.8 2,257,008 + AZOBR_RS10740 0.59 +0.5 2,257,116 + AZOBR_RS10740 0.69 -2.2 2,257,117 - AZOBR_RS10740 0.69 -2.3 2,257,843 + AZOBR_RS10745 0.29 +0.1 2,257,844 - AZOBR_RS10745 0.29 -3.3 2,257,930 + AZOBR_RS10745 0.45 +0.1 2,257,930 + AZOBR_RS10745 0.45 +0.3 2,257,930 + AZOBR_RS10745 0.45 -3.1 2,257,930 + AZOBR_RS10745 0.45 -0.6 2,257,931 - AZOBR_RS10745 0.45 +1.6 2,257,931 - AZOBR_RS10745 0.45 +0.3 2,257,931 - AZOBR_RS10745 0.45 -1.7 2,257,934 - AZOBR_RS10745 0.45 -0.5 2,258,173 + AZOBR_RS10745 0.87 -0.8 2,258,173 + AZOBR_RS10745 0.87 +0.8 2,258,173 + AZOBR_RS10745 0.87 -0.9 2,258,174 - AZOBR_RS10745 0.87 -0.4 2,258,174 - AZOBR_RS10745 0.87 -0.3 2,258,174 - AZOBR_RS10745 0.87 -1.0 2,258,227 + -2.0
Or see this region's nucleotide sequence