Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS10630 and AZOBR_RS10635 are separated by 85 nucleotides AZOBR_RS10635 and AZOBR_RS10640 are separated by 92 nucleotides AZOBR_RS10640 and AZOBR_RS10645 are separated by 38 nucleotides
AZOBR_RS10630: AZOBR_RS10630 - lytic transglycosylase, at 2,232,596 to 2,233,591
_RS10630
AZOBR_RS10635: AZOBR_RS10635 - hypothetical protein, at 2,233,677 to 2,234,435
_RS10635
AZOBR_RS10640: AZOBR_RS10640 - tRNA-Glu, at 2,234,528 to 2,234,603
_RS10640
AZOBR_RS10645: AZOBR_RS10645 - tRNA-Glu, at 2,234,642 to 2,234,717
_RS10645
Position (kb)
2234
2235 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2233.714 kb on - strand at 2233.725 kb on + strand at 2233.725 kb on + strand at 2233.725 kb on + strand at 2233.725 kb on + strand at 2233.726 kb on - strand at 2233.726 kb on - strand at 2233.726 kb on - strand at 2233.726 kb on - strand at 2233.905 kb on + strand, within AZOBR_RS10635 at 2234.064 kb on + strand, within AZOBR_RS10635 at 2234.064 kb on + strand, within AZOBR_RS10635 at 2234.064 kb on + strand, within AZOBR_RS10635 at 2234.065 kb on - strand, within AZOBR_RS10635 at 2234.065 kb on - strand, within AZOBR_RS10635 at 2234.065 kb on - strand, within AZOBR_RS10635 at 2234.119 kb on - strand, within AZOBR_RS10635 at 2234.119 kb on - strand, within AZOBR_RS10635 at 2234.328 kb on + strand, within AZOBR_RS10635 at 2234.329 kb on - strand, within AZOBR_RS10635 at 2234.329 kb on - strand, within AZOBR_RS10635 at 2234.329 kb on - strand, within AZOBR_RS10635 at 2234.349 kb on + strand, within AZOBR_RS10635 at 2234.349 kb on + strand, within AZOBR_RS10635 at 2234.582 kb on + strand, within AZOBR_RS10640 at 2234.582 kb on + strand, within AZOBR_RS10640 at 2234.892 kb on + strand at 2235.374 kb on - strand at 2235.374 kb on - strand at 2235.586 kb on + strand at 2235.599 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,233,714 - +0.7 2,233,725 + -1.8 2,233,725 + +0.0 2,233,725 + +0.4 2,233,725 + -1.4 2,233,726 - +0.4 2,233,726 - -2.8 2,233,726 - -0.3 2,233,726 - -0.9 2,233,905 + AZOBR_RS10635 0.30 +1.9 2,234,064 + AZOBR_RS10635 0.51 -2.9 2,234,064 + AZOBR_RS10635 0.51 +0.5 2,234,064 + AZOBR_RS10635 0.51 +1.1 2,234,065 - AZOBR_RS10635 0.51 -3.1 2,234,065 - AZOBR_RS10635 0.51 -0.5 2,234,065 - AZOBR_RS10635 0.51 +0.7 2,234,119 - AZOBR_RS10635 0.58 -0.6 2,234,119 - AZOBR_RS10635 0.58 -0.3 2,234,328 + AZOBR_RS10635 0.86 -1.3 2,234,329 - AZOBR_RS10635 0.86 +1.1 2,234,329 - AZOBR_RS10635 0.86 +0.6 2,234,329 - AZOBR_RS10635 0.86 +0.1 2,234,349 + AZOBR_RS10635 0.89 -0.3 2,234,349 + AZOBR_RS10635 0.89 +1.0 2,234,582 + AZOBR_RS10640 0.71 -0.6 2,234,582 + AZOBR_RS10640 0.71 +0.5 2,234,892 + +0.6 2,235,374 - +0.2 2,235,374 - +1.7 2,235,586 + +0.8 2,235,599 - -0.3
Or see this region's nucleotide sequence