Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS10600 and AZOBR_RS10605 are separated by 39 nucleotides AZOBR_RS10605 and AZOBR_RS10610 are separated by 217 nucleotides
AZOBR_RS10600: AZOBR_RS10600 - peptidase C69, at 2,225,572 to 2,227,005
_RS10600
AZOBR_RS10605: AZOBR_RS10605 - amino acid-binding protein, at 2,227,045 to 2,227,569
_RS10605
AZOBR_RS10610: AZOBR_RS10610 - hypothetical protein, at 2,227,787 to 2,229,862
_RS10610
Position (kb)
2227
2228 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2226.196 kb on + strand, within AZOBR_RS10600 at 2226.205 kb on + strand, within AZOBR_RS10600 at 2226.205 kb on + strand, within AZOBR_RS10600 at 2226.205 kb on + strand, within AZOBR_RS10600 at 2226.205 kb on + strand, within AZOBR_RS10600 at 2226.206 kb on - strand, within AZOBR_RS10600 at 2226.206 kb on - strand, within AZOBR_RS10600 at 2226.206 kb on - strand, within AZOBR_RS10600 at 2226.206 kb on - strand, within AZOBR_RS10600 at 2226.550 kb on + strand, within AZOBR_RS10600 at 2226.673 kb on + strand, within AZOBR_RS10600 at 2226.716 kb on - strand, within AZOBR_RS10600 at 2226.787 kb on + strand, within AZOBR_RS10600 at 2226.787 kb on + strand, within AZOBR_RS10600 at 2227.457 kb on - strand, within AZOBR_RS10605 at 2227.457 kb on - strand, within AZOBR_RS10605 at 2227.568 kb on - strand at 2227.568 kb on - strand at 2228.027 kb on + strand, within AZOBR_RS10610 at 2228.028 kb on - strand, within AZOBR_RS10610 at 2228.180 kb on + strand, within AZOBR_RS10610 at 2228.180 kb on + strand, within AZOBR_RS10610 at 2228.180 kb on + strand, within AZOBR_RS10610 at 2228.181 kb on - strand, within AZOBR_RS10610 at 2228.253 kb on - strand, within AZOBR_RS10610 at 2228.426 kb on + strand, within AZOBR_RS10610 at 2228.426 kb on + strand, within AZOBR_RS10610 at 2228.427 kb on - strand, within AZOBR_RS10610
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,226,196 + AZOBR_RS10600 0.44 +2.2 2,226,205 + AZOBR_RS10600 0.44 -2.8 2,226,205 + AZOBR_RS10600 0.44 +0.2 2,226,205 + AZOBR_RS10600 0.44 +1.2 2,226,205 + AZOBR_RS10600 0.44 -0.9 2,226,206 - AZOBR_RS10600 0.44 +1.7 2,226,206 - AZOBR_RS10600 0.44 -1.7 2,226,206 - AZOBR_RS10600 0.44 +1.7 2,226,206 - AZOBR_RS10600 0.44 -0.4 2,226,550 + AZOBR_RS10600 0.68 -0.1 2,226,673 + AZOBR_RS10600 0.77 +0.2 2,226,716 - AZOBR_RS10600 0.80 -2.0 2,226,787 + AZOBR_RS10600 0.85 -1.4 2,226,787 + AZOBR_RS10600 0.85 -2.7 2,227,457 - AZOBR_RS10605 0.78 +0.2 2,227,457 - AZOBR_RS10605 0.78 +1.8 2,227,568 - +0.3 2,227,568 - +0.7 2,228,027 + AZOBR_RS10610 0.12 +0.2 2,228,028 - AZOBR_RS10610 0.12 +0.8 2,228,180 + AZOBR_RS10610 0.19 +0.3 2,228,180 + AZOBR_RS10610 0.19 -1.4 2,228,180 + AZOBR_RS10610 0.19 -1.3 2,228,181 - AZOBR_RS10610 0.19 -0.4 2,228,253 - AZOBR_RS10610 0.22 +0.3 2,228,426 + AZOBR_RS10610 0.31 -0.4 2,228,426 + AZOBR_RS10610 0.31 -2.3 2,228,427 - AZOBR_RS10610 0.31 +0.1
Or see this region's nucleotide sequence