Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS10375 and AZOBR_RS10380 are separated by 87 nucleotides AZOBR_RS10380 and AZOBR_RS10385 are separated by 133 nucleotides AZOBR_RS10385 and AZOBR_RS10390 are separated by 51 nucleotides
AZOBR_RS10375: AZOBR_RS10375 - glyceraldehyde-3-phosphate dehydrogenase, at 2,180,538 to 2,181,545
_RS10375
AZOBR_RS10380: AZOBR_RS10380 - HicB, at 2,181,633 to 2,181,977
_RS10380
AZOBR_RS10385: AZOBR_RS10385 - hypothetical protein, at 2,182,111 to 2,182,554
_RS10385
AZOBR_RS10390: AZOBR_RS10390 - hypothetical protein, at 2,182,606 to 2,182,887
_RS10390
Position (kb)
2181
2182 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2180.937 kb on + strand, within AZOBR_RS10375 at 2181.082 kb on - strand, within AZOBR_RS10375 at 2181.082 kb on - strand, within AZOBR_RS10375 at 2181.543 kb on + strand at 2181.778 kb on + strand, within AZOBR_RS10380 at 2181.778 kb on + strand, within AZOBR_RS10380 at 2181.958 kb on + strand at 2181.958 kb on + strand at 2181.958 kb on + strand at 2181.965 kb on + strand at 2181.966 kb on - strand at 2181.966 kb on - strand at 2181.967 kb on + strand at 2181.967 kb on + strand at 2181.967 kb on + strand at 2181.967 kb on + strand at 2181.967 kb on + strand at 2181.967 kb on + strand at 2181.967 kb on + strand at 2181.968 kb on - strand at 2182.001 kb on - strand at 2182.001 kb on - strand at 2182.001 kb on - strand at 2182.001 kb on - strand at 2182.605 kb on + strand at 2182.605 kb on + strand at 2182.852 kb on + strand, within AZOBR_RS10390 at 2182.861 kb on + strand at 2182.861 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,180,937 + AZOBR_RS10375 0.40 -0.1 2,181,082 - AZOBR_RS10375 0.54 -0.3 2,181,082 - AZOBR_RS10375 0.54 -1.9 2,181,543 + -1.7 2,181,778 + AZOBR_RS10380 0.42 +0.5 2,181,778 + AZOBR_RS10380 0.42 -0.4 2,181,958 + +0.4 2,181,958 + +0.1 2,181,958 + +0.4 2,181,965 + +0.1 2,181,966 - +0.8 2,181,966 - +0.6 2,181,967 + +0.1 2,181,967 + -0.5 2,181,967 + -0.2 2,181,967 + +1.8 2,181,967 + +2.1 2,181,967 + +0.4 2,181,967 + -0.6 2,181,968 - +0.0 2,182,001 - -0.6 2,182,001 - +0.8 2,182,001 - +1.0 2,182,001 - +0.4 2,182,605 + +0.2 2,182,605 + +0.9 2,182,852 + AZOBR_RS10390 0.87 +0.4 2,182,861 + +0.8 2,182,861 + +0.4
Or see this region's nucleotide sequence