Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09165

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09155 and AZOBR_RS09160 are separated by 21 nucleotidesAZOBR_RS09160 and AZOBR_RS09165 are separated by 422 nucleotidesAZOBR_RS09165 and AZOBR_RS09170 are separated by 218 nucleotidesAZOBR_RS09170 and AZOBR_RS09175 are separated by 19 nucleotides AZOBR_RS09155: AZOBR_RS09155 - short-chain dehydrogenase, at 1,911,971 to 1,913,002 _RS09155 AZOBR_RS09160: AZOBR_RS09160 - multidrug transporter, at 1,913,024 to 1,913,341 _RS09160 AZOBR_RS09165: AZOBR_RS09165 - hypothetical protein, at 1,913,764 to 1,914,048 _RS09165 AZOBR_RS09170: AZOBR_RS09170 - exported protein of unknown function, at 1,914,267 to 1,914,839 _RS09170 AZOBR_RS09175: AZOBR_RS09175 - hypothetical protein, at 1,914,859 to 1,915,980 _RS09175 Position (kb) 1913 1914 1915Strain fitness (log2 ratio) -2 -1 0 1at 1913.167 kb on - strand, within AZOBR_RS09160at 1913.446 kb on + strandat 1913.449 kb on - strandat 1913.449 kb on - strandat 1913.449 kb on - strandat 1913.449 kb on - strandat 1913.449 kb on - strandat 1913.449 kb on - strandat 1913.679 kb on + strandat 1913.868 kb on - strand, within AZOBR_RS09165at 1913.868 kb on - strand, within AZOBR_RS09165at 1914.769 kb on + strand, within AZOBR_RS09170at 1914.770 kb on - strand, within AZOBR_RS09170at 1914.770 kb on - strand, within AZOBR_RS09170

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,913,167 - AZOBR_RS09160 0.45 -0.6
1,913,446 + +0.3
1,913,449 - -1.1
1,913,449 - -0.4
1,913,449 - +0.2
1,913,449 - +1.5
1,913,449 - -0.3
1,913,449 - +0.4
1,913,679 + +0.4
1,913,868 - AZOBR_RS09165 0.36 -0.3
1,913,868 - AZOBR_RS09165 0.36 -2.2
1,914,769 + AZOBR_RS09170 0.88 +1.4
1,914,770 - AZOBR_RS09170 0.88 -1.0
1,914,770 - AZOBR_RS09170 0.88 -0.3

Or see this region's nucleotide sequence