Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08445 and AZOBR_RS08450 are separated by 63 nucleotides AZOBR_RS08450 and AZOBR_RS08455 are separated by 25 nucleotides AZOBR_RS08455 and AZOBR_RS08460 are separated by 227 nucleotides
AZOBR_RS08445: AZOBR_RS08445 - delta-aminolevulinic acid dehydratase, at 1,773,048 to 1,774,061
_RS08445
AZOBR_RS08450: AZOBR_RS08450 - 3' 5'-cyclic-nucleotide phosphodiesterase, at 1,774,125 to 1,774,973
_RS08450
AZOBR_RS08455: AZOBR_RS08455 - diacylglycerol kinase, at 1,774,999 to 1,775,919
_RS08455
AZOBR_RS08460: AZOBR_RS08460 - enoyl-CoA hydratase, at 1,776,147 to 1,777,223
_RS08460
Position (kb)
1774
1775
1776 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1774.104 kb on - strand at 1774.288 kb on + strand, within AZOBR_RS08450 at 1774.289 kb on - strand, within AZOBR_RS08450 at 1774.394 kb on - strand, within AZOBR_RS08450 at 1774.700 kb on - strand, within AZOBR_RS08450 at 1774.708 kb on + strand, within AZOBR_RS08450 at 1774.709 kb on - strand, within AZOBR_RS08450 at 1774.709 kb on - strand, within AZOBR_RS08450 at 1774.709 kb on - strand, within AZOBR_RS08450 at 1774.709 kb on - strand, within AZOBR_RS08450 at 1774.747 kb on + strand, within AZOBR_RS08450 at 1774.747 kb on + strand, within AZOBR_RS08450 at 1774.748 kb on - strand, within AZOBR_RS08450 at 1775.079 kb on - strand at 1775.079 kb on - strand at 1775.079 kb on - strand at 1775.264 kb on + strand, within AZOBR_RS08455 at 1775.264 kb on + strand, within AZOBR_RS08455 at 1775.264 kb on + strand, within AZOBR_RS08455 at 1775.265 kb on - strand, within AZOBR_RS08455 at 1775.265 kb on - strand, within AZOBR_RS08455 at 1775.265 kb on - strand, within AZOBR_RS08455 at 1775.265 kb on - strand, within AZOBR_RS08455 at 1775.265 kb on - strand, within AZOBR_RS08455 at 1775.603 kb on + strand, within AZOBR_RS08455 at 1775.604 kb on - strand, within AZOBR_RS08455 at 1775.869 kb on - strand at 1776.086 kb on + strand at 1776.087 kb on - strand at 1776.379 kb on - strand, within AZOBR_RS08460 at 1776.450 kb on + strand, within AZOBR_RS08460 at 1776.451 kb on - strand, within AZOBR_RS08460 at 1776.489 kb on + strand, within AZOBR_RS08460 at 1776.489 kb on + strand, within AZOBR_RS08460 at 1776.489 kb on + strand, within AZOBR_RS08460 at 1776.489 kb on + strand, within AZOBR_RS08460 at 1776.610 kb on - strand, within AZOBR_RS08460 at 1776.631 kb on - strand, within AZOBR_RS08460 at 1776.631 kb on - strand, within AZOBR_RS08460
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,774,104 - +0.3 1,774,288 + AZOBR_RS08450 0.19 -0.4 1,774,289 - AZOBR_RS08450 0.19 -0.6 1,774,394 - AZOBR_RS08450 0.32 +2.6 1,774,700 - AZOBR_RS08450 0.68 -0.8 1,774,708 + AZOBR_RS08450 0.69 -2.8 1,774,709 - AZOBR_RS08450 0.69 +1.3 1,774,709 - AZOBR_RS08450 0.69 +1.3 1,774,709 - AZOBR_RS08450 0.69 +0.6 1,774,709 - AZOBR_RS08450 0.69 +1.2 1,774,747 + AZOBR_RS08450 0.73 -0.8 1,774,747 + AZOBR_RS08450 0.73 +0.2 1,774,748 - AZOBR_RS08450 0.73 +0.8 1,775,079 - +0.5 1,775,079 - +0.2 1,775,079 - -0.8 1,775,264 + AZOBR_RS08455 0.29 +1.5 1,775,264 + AZOBR_RS08455 0.29 -1.1 1,775,264 + AZOBR_RS08455 0.29 +0.1 1,775,265 - AZOBR_RS08455 0.29 +0.5 1,775,265 - AZOBR_RS08455 0.29 +0.7 1,775,265 - AZOBR_RS08455 0.29 -3.2 1,775,265 - AZOBR_RS08455 0.29 +0.1 1,775,265 - AZOBR_RS08455 0.29 +0.4 1,775,603 + AZOBR_RS08455 0.66 +0.5 1,775,604 - AZOBR_RS08455 0.66 +0.6 1,775,869 - -1.1 1,776,086 + +0.5 1,776,087 - +0.8 1,776,379 - AZOBR_RS08460 0.22 +1.4 1,776,450 + AZOBR_RS08460 0.28 -1.9 1,776,451 - AZOBR_RS08460 0.28 +1.2 1,776,489 + AZOBR_RS08460 0.32 +1.3 1,776,489 + AZOBR_RS08460 0.32 +1.3 1,776,489 + AZOBR_RS08460 0.32 +1.5 1,776,489 + AZOBR_RS08460 0.32 +0.7 1,776,610 - AZOBR_RS08460 0.43 -0.3 1,776,631 - AZOBR_RS08460 0.45 +1.5 1,776,631 - AZOBR_RS08460 0.45 +1.3
Or see this region's nucleotide sequence