Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS07025 and AZOBR_RS07030 are separated by 78 nucleotides AZOBR_RS07030 and AZOBR_RS07035 are separated by 119 nucleotides AZOBR_RS07035 and AZOBR_RS07040 are separated by 129 nucleotides
AZOBR_RS07025: AZOBR_RS07025 - methyltransferase, at 1,486,769 to 1,487,734
_RS07025
AZOBR_RS07030: AZOBR_RS07030 - hemerythrin, at 1,487,813 to 1,488,271
_RS07030
AZOBR_RS07035: AZOBR_RS07035 - dihydropteroate synthase, at 1,488,391 to 1,489,551
_RS07035
AZOBR_RS07040: AZOBR_RS07040 - phosphoglucosamine mutase, at 1,489,681 to 1,491,048
_RS07040
Position (kb) 1488
1489
1490 Strain fitness (log2 ratio) -2
-1
0
1 at 1487.615 kb on + strand, within AZOBR_RS07025 at 1487.615 kb on + strand, within AZOBR_RS07025 at 1487.615 kb on + strand, within AZOBR_RS07025 at 1487.621 kb on + strand, within AZOBR_RS07025 at 1487.622 kb on - strand, within AZOBR_RS07025 at 1487.966 kb on + strand, within AZOBR_RS07030 at 1488.270 kb on - strand at 1489.567 kb on - strand at 1489.567 kb on - strand at 1489.650 kb on + strand at 1489.650 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,487,615 + AZOBR_RS07025 0.88 +1.2 1,487,615 + AZOBR_RS07025 0.88 +0.4 1,487,615 + AZOBR_RS07025 0.88 +0.7 1,487,621 + AZOBR_RS07025 0.88 -0.4 1,487,622 - AZOBR_RS07025 0.88 -0.6 1,487,966 + AZOBR_RS07030 0.33 +0.6 1,488,270 - +1.2 1,489,567 - +0.8 1,489,567 - -0.1 1,489,650 + -2.2 1,489,650 + -0.6
Or see this region's nucleotide sequence